Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGTCCCATGTTTGGtaatgaaattcattaaattttctgaggaacatttgtggttttgttcaatgttttatattttgacatttttgttttggttcatatgccaaaatctactttgttccaga

Basic information

species Glycine max
transcript GLYMA18G46940.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G46940.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S161_122V6.1 (Physcomitrella patens), 5'ss of exon 4
-TCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGTCCCATGTTTGGtaatgaaattcattaaattttctgaggaacatttgtggttttgttcaatgttttatattttgacatttttgttttggttcatatgccaaaatctactttgttccaga
 |||||||| || ||  ||||||| |||||||| || |||||||||||||||||| |      ||  |  |||  | |  ||  | ||||   |||      ||   |  |  | ||          | | ||   | |||  |  ||| | | |      
GTCAGGATCTGTATGCTTGGATGTCATCAATCAGACTTGGAGTCCCATGTTTGgtgagtgtcctctcttcattg-cagtcgattaattgtaagttt------tggacttcagctggaagacacctgatcgatttcgaggcctgatgctattctatcgtta-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298191785|gb|HO035867.1|HO035867
EST:     GGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGTCCCATGTTTGA                         TCTTGTTAATGTGTTTGTGGTGTTTCTACCTCAACTTCTGCTGTATCCCAA
genomic: GGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGTCCCATGTTTGGtaatgaaatt ... ttgttccagaTCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCAA
EST: gi|208233444|gb|GE034069.1|GE034069
EST:     GGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGTCCCATGTTTGA                         TCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCAA
genomic: GGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGTCCCATGTTTGGtaatgaaatt ... ttgttccagaTCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCAA
EST: gi|18734265|gb|BM528084.1|BM528084
EST:     GGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGTCCCATGTTTGA                         TCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCAA
genomic: GGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGTCCCATGTTTGGtaatgaaatt ... ttgttccagaTCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCAA