1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGTGTGGAAAGTAAGAGTTGAGTTGCCGGATGCTTATCCTTACAAATCTCCTTCCATTGGCTTTATCAACAAGATCTATCACCCAAATGTTGATGAGATGtaagcacatagtagtaatgctctgaaaattgtctgtattgagtagtttacatgtgtattagatataagaataattgtgtgtcggtgcgtctgatctgatcatcttggataacattaatttcagg
species | Glycine max |
transcript | GLYMA18G46940.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTTCCATTGGCTTTATCAACAAGATCTATCACCCAAATGTTGATGAGATG TCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGTCCCATGTTTEST: gi|208233444|gb|GE034069.1|GE034069
genomic: CTTCCATTGGCTTTATCAACAAGATCTATCACCCAAATGTTGATGAGATGtaagcacata ... taatttcaggTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGTCCCATGTTT
EST: CTTCCATTGGCTTTATCAACAAGATCTATCACCCAAATGTTGATGAGATG TCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGTCCCATGTTTEST: gi|33390472|gb|CA853667.1|CA853667
genomic: CTTCCATTGGCTTTATCAACAAGATCTATCACCCAAATGTTGATGAGATGtaagcacata ... taatttcaggTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGTCCCATGTTT
EST: CTTCCATTGGCTTTATCAACAAGATCTATCACCCAAATGTTGATGAGATG TCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGTCCCATGTTTEST: gi|18734265|gb|BM528084.1|BM528084
genomic: CTTCCATTGGCTTTATCAACAAGATCTATCACCCAAATGTTGATGAGATGtaagcacata ... taatttcaggTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGTCCCATGTTT
EST: CTTCCATTGGCTTTATCAACAAGATCTATCACCCAAATGTTGATGAGATG TCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGTCCCATGTTT
genomic: CTTCCATTGGCTTTATCAACAAGATCTATCACCCAAATGTTGATGAGATGtaagcacata ... taatttcaggTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGTCCCATGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGTGGAAAGTAAGAGTTGAGTTGCCGGATGCTTATCCTTACAAATCTCCTTCCATTGGCTTTATCAACAAGATCTATCACCCAAATGTTGATGAGATGtaagcacatagtagtaatgctctgaaaattgtctgtattgagtagtttacatgtgtattagatataagaataattgtgtgtcggtgcgtctgatctgatcatcttggataacattaatttcagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG