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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacacatattttctttgtattttgaatattttattattgtgttgggggctgtctttgttctatttcattctgattaaatatcttctgataacttttgctagGGAGATGAGTTAGAGGAAGGGGAAATTGTAGTATCTGGTGATTCTCACATGGATCATCAACAGTCAGGTAGTTGGATTCATGATCGTGATGAAGGTGAAG

Basic information

species Glycine max
transcript GLYMA18G46930.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G46930.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv15s0046g02290.t01 (Vitis vinifera), 3'ss of exon 11
gtacacatattttctttgtattttgaatattttattattgtgttgggggctgtctttgttctatttcattctgattaaatatcttctgataacttttgctagGGAGATGAGTTAGAGGAAGGGGAAATTGTAGTATCTGGTGATTCTCACATGGATCATCAACAGTCAGGTAGTTGGATTCATGATCGTGATGAAGGTGAAG
|||   || || ||||| ||  || |   |||||  ||||   |||  ||     |||| ||||||  |  |  | |      |||||      ||||| ||  ||||||| ||||||||||||||||||  |||||||| |||||||||||||| || |||||||| || |||||||||||||| ||||||||||||||||
gtatggatcttatctttctaagttca-cgttttaccattggagtggttgcc----ttgtgctattttttcattttca------ttctg----tctttgccagCCAGATGAGCTAGAGGAAGGGGAAATTGCTGTATCTGGAGATTCTCACATGGACCACCAACAGTCTGGAAGTTGGATTCATGACCGTGATGAAGGTGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192327071|gb|FK015463.1|FK015463
EST:     GCTCCCTCTCTGCATTGGATGCCAGGCCAGGCTCCATTTCGAAAATTATG                         GGAGATGAGTTAGAGGAAGGGGAAATTGTAGTATCTGGTGATTCTCACATG
genomic: GCTCCCTCTCTGCATTGGATGCCAGGCCAGGCTCCATTTCGAAAATTATGgtacacatat ... cttttgctagGGAGATGAGTTAGAGGAAGGGGAAATTGTAGTATCTGGTGATTCTCACATG
EST: gi|298195640|gb|HO044031.1|HO044031
EST:     GCTCCCTCTCTGCATTGGACGCCAGGCCAGGCTCCATTTCGAAAATTATG                         GGAGATGAGTTAGAGGAAGGGGAAATTGTAGTATCTGGTGATTCTCACATG
genomic: GCTCCCTCTCTGCATTGGATGCCAGGCCAGGCTCCATTTCGAAAATTATGgtacacatat ... cttttgctagGGAGATGAGTTAGAGGAAGGGGAAATTGTAGTATCTGGTGATTCTCACATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggctgtctttgttctatttcattctgattaaatatcttctgataacttttgctagGGAGATGAGTTAGAGGAAGGGGAAATTGTAGTATCTGGTGATTCTCACATGGATCATCAACAGTCAGGTAGTTGGATTCATGATCGTGATGAAGGTGAAG
                                       tgataac  putative branch site (score: 2)
                                             cttttgct  CT-rich tract
              tatttcattctgatta  TA-rich tract