Sequence
atgc intronic sequence ATGC exonic sequenceGGGACACATTGGGTGGCCACCTTGATGACATGGAAGCAGATTGGAGCAAGCCTATAGTTAGTCTAAGgtattatgttaatttcttttgaatattttgtttttttagattctagatatcaacaggtcaaaagaaagattgaacgtatacttggatcctaattagtttgttgtccccattgcctcag
Basic information
species | Glycine max |
transcript | GLYMA18G00970.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G00970.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os11g29690.1 (Oryza sativa), 5'ss of exon 3
GGGACACATTGGGTGGCCACCTTGATGACATGGAAGCAGATTGGAGCAAGCCTATAGTTAGTCTAAGgtattatgttaatttcttttgaatattttgtttttttagatt-ctagatatcaacaggtcaaaagaaagattgaacgtatacttggatcctaattagtttgttgtccccattgcctcag
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GTGACATGCTTGGTGGCCACGTTGATGACATGGAAGCAGATTGGAGTAAACCTATTGTAAGCATAAGgtaata-attatgcttcactaactttttcatgttatgatgtcactcgatcttaaca----aagtggcttcctttttataaatttag---------------------------------
upper sequence: GLYMA18G00970.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM5G844096_T02 (Zea mays), 5'ss of exon 5
GGGACACATTGGGTGGCCACCTTGATGACATGGAAGCAGATTGGAGCAAGCCTATAGTTAGTCTAAGgtattatgttaatttcttttgaatattttgtttttttagattctagatatcaacaggtcaaaagaaagattgaacgtatacttggatcctaattagtttgttgtccccattgcctcag
| |||| | |||||||| |||||||||||||||||||||||| || ||||| || || |||||||| ||| | || | | | || | || |||| | || ||| | | | | || |
GTGACATGCTTGGTGGCCATGTTGATGACATGGAAGCAGATTGGACAAAACCTATTGTAAGCATAAGgtatgatggcccagcttcttacctttatcgtgatctttacttcttctaaacatagcgtcttaccagttgtcatttattcttttag---------------------------------
upper sequence: GLYMA18G00970.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv01s0010g03650.t01 (Vitis vinifera), 5'ss of exon 5
GGGACACATTGGGTGGCCACCTTGATGACATGGAAGCAGATTGGAGCAAGCCTATAGTTAGTCTAAGgtattatgttaatttcttttgaatattttgtttttttagattctagatatcaacaggtcaaaagaaagattgaacgtatacttggatcctaattagtttgttgtccccattgcctcag
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GTGATATGCTTGGGGGCCACCTAGATGACATGGAAGCAGATTGGACTAAACCTATAGTGAGCATGAGgtatcatgct---tttctttgttaatgttcctgagcagaaatttaaatatcatgttggggcctgaatgtttttatctttccctcagtttgggctgcaaagcta---------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192309383|gb|FK000591.1|FK000591EST: CACCTTGATGACATGGAAGCAGATTGGAGCAAGCCTATAGTTAGTCTAAG TCTGGGCTGCAAAGCTATATTTCTTTTAGGAGGAAAATCCAGAGAGGATAC
genomic: CACCTTGATGACATGGAAGCAGATTGGAGCAAGCCTATAGTTAGTCTAAGgtattatgtt ... attgcctcagTCTGGGCTGCAAAGCTATATTTCTTTTAGGAGGAAAATCCAGAGAGGATAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGACACATTGGGTGGCCACCTTGATGACATGGAAGCAGATTGGAGCAAGCCTATAGTTAGTCTAAGgtattatgttaatttcttttgaatattttgtttttttagattctagatatcaacaggtcaaaagaaagattgaacgtatacttggatcctaattagtttgttgtccccattgcctcag
- - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - AGCAAG