1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCGAGAATGACCGAGATGATTCGGAACGAACGGCGTTCAGAAGAGCAGAGAAGAAGTACAAGCTCTACTACGACAACAATGCTTCTTCCAAGAACAAAAGgtattttactattttattttatttcctttgaattgaacgttgattctttcagattctaattgaaattccctttcttaacag
species | Glycine max |
transcript | GLYMA18G00970.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTTCTTCCAAGAACAAAAG GAAAAAGCTACCTAAACCCGTGGATTTAACGGAGGTCCTTGACTTCAGATCEST: gi|213620336|gb|DB961481.1|DB961481
genomic: CTTCTTCCAAGAACAAAAGgtattttact ... ttcttaacagGAAAAAGCTACCTAAACCCGTGGATTTAACGGAGGTCCTTGACTTCAGATC
EST: AAGAAGTACAAGCTCTACTACGACAACAATGCTTCTTCCAAGAACAAAAG GAAAAAGCTACCTAAACCCGTGGATTTAACGGAGGTCCTTGACTTCAGATC
genomic: AAGAAGTACAAGCTCTACTACGACAACAATGCTTCTTCCAAGAACAAAAGgtattttact ... ttcttaacagGAAAAAGCTACCTAAACCCGTGGATTTAACGGAGGTCCTTGACTTCAGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGAGAATGACCGAGATGATTCGGAACGAACGGCGTTCAGAAGAGCAGAGAAGAAGTACAAGCTCTACTACGACAACAATGCTTCTTCCAAGAACAAAAGgtattttactattttattttatttcctttgaattgaacgttgattctttcagattctaattgaaattccctttcttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC