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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttactattttattttatttcctttgaattgaacgttgattctttcagattctaattgaaattccctttcttaacagGAAAAAGCTACCTAAACCCGTGGATTTAACGGAGGTCCTTGACTTCAGATCTATTCTAGAATGCTATCTCCAAAACGATGTGCTTCCTCCGGGTGTTATC

Basic information

species Glycine max
transcript GLYMA18G00970.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15202983|gb|BI425751.1|BI425751
EST:     CTTCTTCCAAGAACAAAAG                         GAAAAAGCTACCTAAACCCGTGGATTTAACGGAGGTCCTTGACTTCAGATC
genomic: CTTCTTCCAAGAACAAAAGgtattttact ... ttcttaacagGAAAAAGCTACCTAAACCCGTGGATTTAACGGAGGTCCTTGACTTCAGATC
EST: gi|213620336|gb|DB961481.1|DB961481
EST:     AAGAAGTACAAGCTCTACTACGACAACAATGCTTCTTCCAAGAACAAAAG                         GAAAAAGCTACCTAAACCCGTGGATTTAACGGAGGTCCTTGACTTCAGATC
genomic: AAGAAGTACAAGCTCTACTACGACAACAATGCTTCTTCCAAGAACAAAAGgtattttact ... ttcttaacagGAAAAAGCTACCTAAACCCGTGGATTTAACGGAGGTCCTTGACTTCAGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgaattgaacgttgattctttcagattctaattgaaattccctttcttaacagGAAAAAGCTACCTAAACCCGTGGATTTAACGGAGGTCCTTGACTTCAGATCTATTCTAGAATGCTATCTCCAAAACGATGTGCTTCCTCCGGGTGTTATC
                           ttctaat  putative branch site (score: 2)
                                       ttccctttcttaac  putative PPT
                          attctaattgaaatt  TA-rich tract