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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cctagagtattaagcttcagccactattgtttatatatttgatctattctatctcaaagctggcagtaagtgcagattgtgtgactttattttcttgtagGTTGATCAACATCCCCTATATCTATTCCCAAGATGCCTTTTTGTTGTAAGAACTGATGGTAGCTGGATCGACTTCTCCTATCGGGTGTGCATTGAGGAAT

Basic information

species Glycine max
transcript GLYMA17G35680.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298173492|gb|HO016828.1|HO016828
EST:     ACCATCCGGATTATGAAGATAAGATAGGAGGTGGGCTGAACTCCATTATG                         GTTGATCAACATCCCCTATATCTATTCCCAAGATGCCTTTTTGTTGTAAGA
genomic: ACCATCCGGATTATGAAGATAAGATAGGAAGTGGGCTGAACTCCATTATGgtaagtgaag ... tttcttgtagGTTGATCAACATCCCCTATATCTATTCCCAAGATGCCTTTTTGTTGTAAGA
EST: gi|298186435|gb|HO037068.1|HO037068
EST:     ACCATCCGGATTATGAAGATAAGATAGGAAGTGGGCCGAACTCCATTATG                         GTTGATCAACATCCCCTATATCTATTCCCAAGATGCCTTTTTGTTGTAAGA
genomic: ACCATCCGGATTATGAAGATAAGATAGGAAGTGGGCTGAACTCCATTATGgtaagtgaag ... tttcttgtagGTTGATCAACATCCCCTATATCTATTCCCAAGATGCCTTTTTGTTGTAAGA
EST: gi|208067413|gb|GD866943.1|GD866943
EST:     ACTCCATTATG                         GTTGATCAACATCCCCTATATCTATTCCCAAGATGCCTTTTCGTTGTAAGA
genomic: ACTCCATTATGgtaagtgaag ... tttcttgtagGTTGATCAACATCCCCTATATCTATTCCCAAGATGCCTTTTTGTTGTAAGA
EST: gi|193699030|gb|FK641249.1|FK641249
EST:     ATAGGAAGTGGGCTGAACTCCATTATG                         GTTGATCAACATCCCCTATATCTATTCCCAAGATGCCTTTTTGTTGTAAGA
genomic: ATAGGAAGTGGGCTGAACTCCATTATGgtaagtgaag ... tttcttgtagGTTGATCAACATCCCCTATATCTATTCCCAAGATGCCTTTTTGTTGTAAGA
EST: gi|207691193|gb|GD673201.1|GD673201
EST:     ACCATCCGGATTATGAAGATAAGATAGGAAGTGGGCTGAACTCCATTATG                         GTTGATCAACATCCCCTATATCTATTCCCAAGATGCCTTTT
genomic: ACCATCCGGATTATGAAGATAAGATAGGAAGTGGGCTGAACTCCATTATGgtaagtgaag ... tttcttgtagGTTGATCAACATCCCCTATATCTATTCCCAAGATGCCTTTT
EST: gi|298194199|gb|HO040847.1|HO040847
EST:     ACCATCCGGATTATGAAGATAAGATAGGAAGTGGGCTGAACTCCATTATG                         GTTGATCAACATCCCCTATATCTATTCCCAAGATGCCTTTTTGTTGTAAGA
genomic: ACCATCCGGATTATGAAGATAAGATAGGAAGTGGGCTGAACTCCATTATGgtaagtgaag ... tttcttgtagGTTGATCAACATCCCCTATATCTATTCCCAAGATGCCTTTTTGTTGTAAGA
EST: gi|208182871|gb|GD984845.1|GD984845
EST:     ACCATCCGGATTATGAAGATAAGATAGGAAGTGGGCTGAACTCCATTATG                         GTTGATCAACATCCCCTATATCTATTCCCAAGATGCCTTTTTGTTGTAAGA
genomic: ACCATCCGGATTATGAAGATAAGATAGGAAGTGGGCTGAACTCCATTATGgtaagtgaag ... tttcttgtagGTTGATCAACATCCCCTATATCTATTCCCAAGATGCCTTTTTGTTGTAAGA
EST: gi|298198913|gb|HO042276.1|HO042276
EST:     ACCATCCGGATTATGAAGATAAGATAGGAAGTGGGCTGGACTCCATTATG                         GTTGATCAACATCCCCTATATCTATTCCCAAGATGCCTTTTTGTTGTAAGA
genomic: ACCATCCGGATTATGAAGATAAGATAGGAAGTGGGCTGAACTCCATTATGgtaagtgaag ... tttcttgtagGTTGATCAACATCCCCTATATCTATTCCCAAGATGCCTTTTTGTTGTAAGA
EST: gi|207707285|gb|GD688127.1|GD688127
EST:     ACCATCCGGATTATGAAGATAAGATAGGAAGTGGGCTGAACTCCATTATG                         GTTGATCAACATCCCCTATATCTATT
genomic: ACCATCCGGATTATGAAGATAAGATAGGAAGTGGGCTGAACTCCATTATGgtaagtgaag ... tttcttgtagGTTGATCAACATCCCCTATATCTATT
EST: gi|193422113|gb|FK387122.1|FK387122
EST:     ACCATCCGGATTATGAAGATAAGATAGGAAGTGGGCTGAACTCCATTATG                         GTTGATCAACATCCCCTATATCTATTCCCAAGATGCCTTTTTGTTGTAAGA
genomic: ACCATCCGGATTATGAAGATAAGATAGGAAGTGGGCTGAACTCCATTATGgtaagtgaag ... tttcttgtagGTTGATCAACATCCCCTATATCTATTCCCAAGATGCCTTTTTGTTGTAAGA
EST: gi|208194705|gb|GD989346.1|GD989346
EST:     ACCATCCGGATTATGAAGATAAGATAGGAAGTGGGCTGAACTCCATTATG                         GTTGATCAACATCCCCTA
genomic: ACCATCCGGATTATGAAGATAAGATAGGAAGTGGGCTGAACTCCATTATGgtaagtgaag ... tttcttgtagGTTGATCAACATCCCCTA
EST: gi|193371286|gb|FK336883.1|FK336883
EST:     ACCATCCGGATTATGAAGATAAGATAGGAAGTGGGCTGAACTCCATTATG                         GTTGATCAACATCCCCTATATCTATTCCCAAG
genomic: ACCATCCGGATTATGAAGATAAGATAGGAAGTGGGCTGAACTCCATTATGgtaagtgaag ... tttcttgtagGTTGATCAACATCCCCTATATCTATTCCCAAG
EST: gi|208032854|gb|GD830485.1|GD830485
EST:     ACCATCCGGATTATGAAGATAAGATAGGAAGTGGGCTGAACTCCATTATG                         GTTGATCAACATCCCCTATATCTATTCCCAAGATGCCTT
genomic: ACCATCCGGATTATGAAGATAAGATAGGAAGTGGGCTGAACTCCATTATGgtaagtgaag ... tttcttgtagGTTGATCAACATCCCCTATATCTATTCCCAAGATGCCTT
EST: gi|208149829|gb|GD949835.1|GD949835
EST:     ACCATCCGGATTATGAAGATAAGATAGGAAGTGGGCTGAACTCCATTATG                         GTTGATCAACATCCCCTATATCTATTCCCAAGATGCCTTTTTGTTGTAAGA
genomic: ACCATCCGGATTATGAAGATAAGATAGGAAGTGGGCTGAACTCCATTATGgtaagtgaag ... tttcttgtagGTTGATCAACATCCCCTATATCTATTCCCAAGATGCCTTTTTGTTGTAAGA
EST: gi|208194168|gb|GD989873.1|GD989873
EST:     ACCATCCGGATTATGAAGATAAGATAGGAAGTGGGCTGAACTCCATTATG                         GTTGATCAACATCCCCTATATCT
genomic: ACCATCCGGATTATGAAGATAAGATAGGAAGTGGGCTGAACTCCATTATGgtaagtgaag ... tttcttgtagGTTGATCAACATCCCCTATATCT
EST: gi|298167042|gb|HO010481.1|HO010481
EST:     ACCATCCGGATTATGAAGATAAGATAGGAAGTGGGCTGAACTCCATTATG                         GTTGATCAACATCCCCTATATCTATTCCCAAGATGCCTTTT-GTTGTAAGA
genomic: ACCATCCGGATTATGAAGATAAGATAGGAAGTGGGCTGAACTCCATTATGgtaagtgaag ... tttcttgtagGTTGATCAACATCCCCTATATCTATTCCCAAGATGCCTTTTTGTTGTAAGA
EST: gi|208222277|gb|GE018181.1|GE018181
EST:     ACCATCCGGATTATGAAGATAAGATAGGAAGTGGGCTGAACTCCATTATG                         GTTGATCAACATCCCCTA
genomic: ACCATCCGGATTATGAAGATAAGATAGGAAGTGGGCTGAACTCCATTATGgtaagtgaag ... tttcttgtagGTTGATCAACATCCCCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctatctcaaagctggcagtaagtgcagattgtgtgactttattttcttgtagGTTGATCAACATCCCCTATATCTATTCCCAAGATGCCTTTTTGTTGTAAGAACTGATGGTAGCTGGATCGACTTCTCCTATCGGGTGTGCATTGAGGAAT
                                       ctttattttcttgt  CT-rich tract
                                        tttattttcttgta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cctagagtattaagcttcagccactattgtttatatatttgatctattctatctcaaagctggcagtaagtgcagattgtgtgactttattttcttgtagGTTGATCAACATCCCCTATATCTATTCCCAAGATGCCTTTTTGTTGTAAGAACTGATGGTAGCTGGATCGACTTCTCCTATCGGGTGTGCATTGAGGAAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA