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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGAGGTGGATGACCCCGAGTGGAGGAAGAAAGAAGAGAAGATCGTGAGGGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtcagattattaaatcaattcattattgttaagattgcaagtctctgaaacgacgacttgtctctttgcca

Basic information

species Glycine max
transcript GLYMA17G35680.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298173492|gb|HO016828.1|HO016828
EST:     GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
EST: gi|207822158|gb|GD793519.1|GD793519
EST:     GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
EST: gi|208099674|gb|GD897929.1|GD897929
EST:     GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
EST: gi|298186435|gb|HO037068.1|HO037068
EST:     GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
EST: gi|207691193|gb|GD673201.1|GD673201
EST:     GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
EST: gi|298194199|gb|HO040847.1|HO040847
EST:     GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
EST: gi|193540256|gb|FK497364.1|FK497364
EST:     GACGTTGAGCCAAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GACGTTGAGCC-AATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
EST: gi|208182871|gb|GD984845.1|GD984845
EST:     GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
EST: gi|298198913|gb|HO042276.1|HO042276
EST:     GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCACCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
EST: gi|208226250|gb|GE026767.1|GE026767
EST:     GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
EST: gi|207707285|gb|GD688127.1|GD688127
EST:     GGACGTTGAGCCAATCGTTTCGTTAACCACGCAAATTCTCTACTCATCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
EST: gi|208194705|gb|GD989346.1|GD989346
EST:     GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
EST: gi|193371286|gb|FK336883.1|FK336883
EST:     GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
EST: gi|208032854|gb|GD830485.1|GD830485
EST:     GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
EST: gi|208194168|gb|GD989873.1|GD989873
EST:     GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
EST: gi|298167042|gb|HO010481.1|HO010481
EST:     GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATCCTCTACTCATCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
EST: gi|208222277|gb|GE018181.1|GE018181
EST:     GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG