Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggtattgtcagattattaaatcaattcattattgttaagattgcaagtctctgaaacgacgacttgtctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGAGAACATTCTCATTTACCATCCGGATTATGAAGATAAGATAGGAAGTGG

Basic information

species Glycine max
transcript GLYMA17G35680.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298173492|gb|HO016828.1|HO016828
EST:     GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
EST: gi|207822158|gb|GD793519.1|GD793519
EST:     GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
EST: gi|208099674|gb|GD897929.1|GD897929
EST:     GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
EST: gi|298186435|gb|HO037068.1|HO037068
EST:     GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
EST: gi|207691193|gb|GD673201.1|GD673201
EST:     GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
EST: gi|298194199|gb|HO040847.1|HO040847
EST:     GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
EST: gi|193540256|gb|FK497364.1|FK497364
EST:     GACGTTGAGCCAAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GACGTTGAGCC-AATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
EST: gi|208182871|gb|GD984845.1|GD984845
EST:     GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
EST: gi|298198913|gb|HO042276.1|HO042276
EST:     GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCACCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
EST: gi|208226250|gb|GE026767.1|GE026767
EST:     GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
EST: gi|207707285|gb|GD688127.1|GD688127
EST:     GGACGTTGAGCCAATCGTTTCGTTAACCACGCAAATTCTCTACTCATCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
EST: gi|208194705|gb|GD989346.1|GD989346
EST:     GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
EST: gi|193371286|gb|FK336883.1|FK336883
EST:     GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
EST: gi|208032854|gb|GD830485.1|GD830485
EST:     GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
EST: gi|208194168|gb|GD989873.1|GD989873
EST:     GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
EST: gi|298167042|gb|HO010481.1|HO010481
EST:     GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATCCTCTACTCATCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
EST: gi|208222277|gb|GE018181.1|GE018181
EST:     GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAA                         GGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG
genomic: GGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAggtattgtca ... ctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattcattattgttaagattgcaagtctctgaaacgacgacttgtctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGAGAACATTCTCATTTACCATCCGGATTATGAAGATAAGATAGGAAGTGG
                                        cttgtctctttgcc  CT-rich tract
     attattgttaagatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggtattgtcagattattaaatcaattcattattgttaagattgcaagtctctgaaacgacgacttgtctctttgccaGGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGAGAACATTCTCATTTACCATCCGGATTATGAAGATAAGATAGGAAGTGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA