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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggttttttggtttttcatttatctgtttttatgacaaagctttcctttctgcattaacattttaacatgcattattttgcaGTTGAACTTTCTCAAGCATTTTTTAGGGGGAGGGTTCATCAAGCATATTCA

Basic information

species Glycine max
transcript GLYMA17G35340.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15204040|gb|BI426808.1|BI426808
EST:     AAAATTGGTGGTGATTCACTGCAGACATCTTCATGGTCCCAAATGATACA                         GTTGAACTTTCTCAAGCATTTTTTAGGGGGAGGGTTCATCAAGCATATTCA
genomic: AAAATTGGTGGTGATTCACTGCAGACATCTTCATGGTCCCAAATGATACAggttttttgg ... ttattttgcaGTTGAACTTTCTCAAGCATTTTTTAGGGGGAGGGTTCATCAAGCATATTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttatgacaaagctttcctttctgcattaacattttaacatgcattattttgcaGTTGAACTTTCTCAAGCATTTTTTAGGGGGAGGGTTCATCAAGCATATTCA
                                 ttttaac  putative branch site (score: 2)
                                             ttatttt  putative PPT
                          attaacattttaacat  TA-rich tract