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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggtaagattttgattaacttctgtatgcttgatgttgcttcatataattaaatttcaatttaattattttgtaGGTTTGTTGACCCTGACTGTTGGGTGTAGTGATAATGCACGTGAAATATTTGAGGAATCGGTTCGTCCTCTAGATGAATTTCTCACATCTAAATCACATT

Basic information

species Glycine max
transcript GLYMA17G35340.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23064020|gb|BU578793.1|BU578793
EST:     GATCCAAAAAGGCATCTGCAAAGGAGATAGCTTTGGCATCACATGCCATT                         GGTTTGTTGACCCTGACTGTTGGGTGTAGTGATAATGCACGTGAAATATTT
genomic: GATCCAAAAAGGCATCTGCAAAGGAGATAGCTTTGGCATCACATGCCATTggtaagattt ... ttattttgtaGGTTTGTTGACCCTGACTGTTGGGTGTAGTGATAATGCACGTGAAATATTT
EST: gi|33389993|gb|CA853200.1|CA853200
EST:     AGGAGATAGCTTTGGCATCACATGCCATT                         GGTTTGTTGACCCTGACTGTTGGGTGTAGTGATAATGCACGTGAAATATTT
genomic: AGGAGATAGCTTTGGCATCACATGCCATTggtaagattt ... ttattttgtaGGTTTGTTGACCCTGACTGTTGGGTGTAGTGATAATGCACGTGAAATATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgtatgcttgatgttgcttcatataattaaatttcaatttaattattttgtaGGTTTGTTGACCCTGACTGTTGGGTGTAGTGATAATGCACGTGAAATATTTGAGGAATCGGTTCGTCCTCTAGATGAATTTCTCACATCTAAATCACATT
                                       atttaat  putative branch site (score: 4)
                                             ttatttt  CT-rich tract
             atgttgcttcatataa  TA-rich tract