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...tttggatatttgggaaatcttgtgtactcaaaatttgccttctgattcattagagacactgattctgaatcttctctgttcaatgccattattttttataGTTGCTGGAATGCTTGGCTATAATCACATTTGTTGGTGGGAATGGTCTGGAGGAAACAGAGAGATCGATGGACATACTGTGGCGAGTGATTCATCCCAGA
species | Glycine max |
transcript | GLYMA17G35340.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCTCTAGATGAATTTCTCACATCTAAATCACATTTGACAAAAATTCCTTC ATTGCTGGAATGCTTGGCTATAATCACATTTGTTGGTGGGAATGGTCTGGAEST: gi|33389993|gb|CA853200.1|CA853200
genomic: CCTCTAGATGAATTTCTCACATCTAAATCACATTTGACAAAAATTCCTTCagtaagtgtt ... attttttataGTTGCTGGAATGCTTGGCTATAATCACATTTGTTGGTGGGAATGGTCTGGA
EST: CCTCTAGATGAATTTCTCACATCTAAATCACATTTGACAAAAATTCCTTC ATTGCTGGAATGCTTGGCTATAATCACATTTGTTGGTGGGAATGGTCTGGA
genomic: CCTCTAGATGAATTTCTCACATCTAAATCACATTTGACAAAAATTCCTTCagtaagtgtt ... attttttataGTTGCTGGAATGCTTGGCTATAATCACATTTGTTGGTGGGAATGGTCTGGA
ttcattagagacactgattctgaatcttctctgttcaatgccattattttttataGTTGCTGGAATGCTTGGCTATAATCACATTTGTTGGTGGGAATGGTCTGGAGGAAACAGAGAGATCGATGGACATACTGTGGCGAGTGATTCATCCCAGA
cactgat putative branch site (score: 3)
ttatttttt putative PPT
attattttttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttggatatttgggaaatcttgtgtactcaaaatttgccttctgattcattagagacactgattctgaatcttctctgttcaatgccattattttttataGTTGCTGGAATGCTTGGCTATAATCACATTTGTTGGTGGGAATGGTCTGGAGGAAACAGAGAGATCGATGGACATACTGTGGCGAGTGATTCATCCCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - tgtgtac
- - - - - - - - - - - - - - - - - - gccttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gattctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgcca