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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCAAATGGGTTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAGgtgaatgatctatctgatgaattctactttgcccatttattaggttatgcaatttagtttagttttaaactctataaaaaataactctattaacagaatt...

Basic information

species Glycine max
transcript GLYMA17G35320.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20814689|gb|BQ299167.1|BQ299167
EST:     TTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGT-TA--                         T--CGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTT
genomic: TTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAGgtgaatgatc ... tgtgttacagTATCGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTT
EST: gi|19346654|gb|BM891534.1|BM891534
EST:     TTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAG                         TATCGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTT
genomic: TTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAGgtgaatgatc ... tgtgttacagTATCGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTT
EST: gi|15664392|gb|BI701763.1|BI701763
EST:     TTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAG                         TATCGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTT
genomic: TTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAGgtgaatgatc ... tgtgttacagTATCGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTT
EST: gi|254320399|gb|GR826848.1|GR826848
EST:     TTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAG                         TATCGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTT
genomic: TTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAGgtgaatgatc ... tgtgttacagTATCGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTT
EST: gi|19453500|gb|BM954910.1|BM954910
EST:     TTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAG                         TATCGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTT
genomic: TTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAGgtgaatgatc ... tgtgttacagTATCGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTT
EST: gi|208073038|gb|GD868131.1|GD868131
EST:     TTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAG                         TATCGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTT
genomic: TTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAGgtgaatgatc ... tgtgttacagTATCGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTT
EST: gi|22541619|gb|BU091462.1|BU091462
EST:     TTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAG                         TATCGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTT
genomic: TTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAGgtgaatgatc ... tgtgttacagTATCGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTT
EST: gi|254320398|gb|GR826847.1|GR826847
EST:     TTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAG                         TATCGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTT
genomic: TTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAGgtgaatgatc ... tgtgttacagTATCGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGCAAATGGGTTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAGgtgaatgatctatctgatgaattctactttgcccatttattaggttatgcaatttagtttagttttaaactctataaaaaataactctattaacagaatt

- - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaata