1 5' 3' | 2 5' 3' | 3 5' 3' |
...tagaaaccaatatcaagtaccttttgactttgctgaatgtaaatgtctctttattgtttagatcattttgtctcaatagttttcttttcttgtgttacagTATCGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTTCCGAAGATGTGAAGATCTTTTCTGCAATAATTGTATCACAAGTGCAATT
species | Glycine max |
transcript | GLYMA17G35320.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGT-TA-- T--CGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTTEST: gi|19346654|gb|BM891534.1|BM891534
genomic: TTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAGgtgaatgatc ... tgtgttacagTATCGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTT
EST: TTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAG TATCGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTTEST: gi|15664392|gb|BI701763.1|BI701763
genomic: TTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAGgtgaatgatc ... tgtgttacagTATCGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTT
EST: TTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAG TATCGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTTEST: gi|254320399|gb|GR826848.1|GR826848
genomic: TTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAGgtgaatgatc ... tgtgttacagTATCGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTT
EST: TTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAG TATCGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTTEST: gi|19453500|gb|BM954910.1|BM954910
genomic: TTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAGgtgaatgatc ... tgtgttacagTATCGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTT
EST: TTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAG TATCGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTTEST: gi|208073038|gb|GD868131.1|GD868131
genomic: TTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAGgtgaatgatc ... tgtgttacagTATCGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTT
EST: TTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAG TATCGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTTEST: gi|22541619|gb|BU091462.1|BU091462
genomic: TTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAGgtgaatgatc ... tgtgttacagTATCGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTT
EST: TTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAG TATCGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTTEST: gi|254320398|gb|GR826847.1|GR826847
genomic: TTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAGgtgaatgatc ... tgtgttacagTATCGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTT
EST: TTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAG TATCGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTT
genomic: TTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAGgtgaatgatc ... tgtgttacagTATCGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTT
tctctttattgtttagatcattttgtctcaatagttttcttttcttgtgttacagTATCGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTTCCGAAGATGTGAAGATCTTTTCTGCAATAATTGTATCACAAGTGCAATT
ttttcttttcttgtgt CT-rich tract
aatagttttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagaaaccaatatcaagtaccttttgactttgctgaatgtaaatgtctctttattgtttagatcattttgtctcaatagttttcttttcttgtgttacagTATCGATGACAGGTCCAACCAGAATTCTATGCTCTGCATGCTTCCCTTGTTCCGAAGATGTGAAGATCTTTTCTGCAATAATTGTATCACAAGTGCAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- gaaaccaa
- - - - - - -caagtac
- - - - - - - - - - - - - - - tgctgaa