1 5' 3' | 2 5' 3' | 3 5' 3' |
...cttgcccatgctttttgactaacaattttcaaatagatttgtgccataatcttattagacctcagcaatgatatattttgactttcatttgtggatgcagTGGCAAATGGGTTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAG
species | Glycine max |
transcript | GLYMA17G35320.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAATGGCAAAGCAATCTGCAAACGCCAACAAAGGCGAACCAGTTCTAAAG TGGCAAATGGGTTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATEST: gi|19346654|gb|BM891534.1|BM891534
genomic: CAATGGCAAAGCAATCTGCAAACGCCAACAAAGGCGAACCAGTTCTAAAGgttggtttgg ... gtggatgcagTGGCAAATGGGTTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTAT
EST: CAATGGCAAAGCAATCTGCAAACGCCAACAAAGGCGAACCAGTTCTAAAG TGGCAAATGGGTTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATEST: gi|15664392|gb|BI701763.1|BI701763
genomic: CAATGGCAAAGCAATCTGCAAACGCCAACAAAGGCGAACCAGTTCTAAAGgttggtttgg ... gtggatgcagTGGCAAATGGGTTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTAT
EST: CAATGGCAAAGCAATCTGCAAACGCCAACAAAGGCGAACCAGTTCTAAAG TGGCAAATGGGTTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATEST: gi|254320399|gb|GR826848.1|GR826848
genomic: CAATGGCAAAGCAATCTGCAAACGCCAACAAAGGCGAACCAGTTCTAAAGgttggtttgg ... gtggatgcagTGGCAAATGGGTTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTAT
EST: CAATGGCAAAGCAATCTGCAAACGCCAACAAAGGCGAACCAGTTCTAAAG TGGCAAATGGGTTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATEST: gi|19453500|gb|BM954910.1|BM954910
genomic: CAATGGCAAAGCAATCTGCAAACGCCAACAAAGGCGAACCAGTTCTAAAGgttggtttgg ... gtggatgcagTGGCAAATGGGTTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTAT
EST: CAATGGCAAAGCAATCTGCAAACGCCAACAAAGGCGAACCAGTTCTAAAG TGGCAAATGGGTTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATEST: gi|208073038|gb|GD868131.1|GD868131
genomic: CAATGGCAAAGCAATCTGCAAACGCCAACAAAGGCGAACCAGTTCTAAAGgttggtttgg ... gtggatgcagTGGCAAATGGGTTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTAT
EST: CAGTTCTAAAG TGGCAAATGGGTTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATEST: gi|22541619|gb|BU091462.1|BU091462
genomic: CAGTTCTAAAGgttggtttgg ... gtggatgcagTGGCAAATGGGTTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTAT
EST: CAATGGCAAAGCAATCTGCAAACGCCAACAAAGGCGAACCAGTTCTAAAG TGGCAAATGGGTTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATEST: gi|254320398|gb|GR826847.1|GR826847
genomic: CAATGGCAAAGCAATCTGCAAACGCCAACAAAGGCGAACCAGTTCTAAAGgttggtttgg ... gtggatgcagTGGCAAATGGGTTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTAT
EST: CAATGGCAAAGCAATCTGCAAACGCCAACAAAGGCGAACCAGTTCTAAAG TGGCAAATGGGTTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTAT
genomic: CAATGGCAAAGCAATCTGCAAACGCCAACAAAGGCGAACCAGTTCTAAAGgttggtttgg ... gtggatgcagTGGCAAATGGGTTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTAT
ataatcttattagacctcagcaatgatatattttgactttcatttgtggatgcagTGGCAAATGGGTTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAG
ttttgac putative branch site (score: 3)
aatgatatattttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgcccatgctttttgactaacaattttcaaatagatttgtgccataatcttattagacctcagcaatgatatattttgactttcatttgtggatgcagTGGCAAATGGGTTGAGGTTAGACAATCTGTCTGTTGGAGTTAACTTTTTATTACGTGTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
cttgccc
- - - - tgctttt
- - - - - - - - -actaaca
- - - - - - - - - - - - - - - - - - -tttgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcaatg