Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATGCTACATTGGGCAATGAAATCTATAGGATTACAGCTGGACTTGGAGGGTTGGGCAATGGACATGAACTTTGTATATGGTCATTACTGTCTTTAAGgtgatagagaatgcatctttttgttgaattgccttcaaaatgaaactaaatatgcatattataattttgatggtggagttctttcttcctatttacaaactcttgtagctaattggttagttattatctag

Basic information

species Glycine max
transcript GLYMA17G35220.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G35220.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv18s0001g08860.t01 (Vitis vinifera), 5'ss of exon 6
GGAATGCTACATTGGGCAATGAAATCTATAGGATTACAGCTGGACTTGGAGGGTTGGGCAATGGACATGAACTTTGTATATGGTCATTACTGTCTTTAAGgtgatagagaatgcatctttttgttgaattgccttcaaaatgaaactaaatatgcatattataattttgatggtggagttctttcttcctatttacaaactcttgtagctaattggttagttattatctag
|| |||||| |||||   |||| || || || || |||| ||| ||||||||||| || | |||||  |||||||||||||||||||||||  |  | |||| |   |  ||  |||| |||     || |   ||||   |   ||  |||     |     |||||  |     |  |   | ||  || || ||                                  
GGGATGCTAAATTGGCTCATGAGATTTACAGAATAACAGTTGGGCTTGGAGGGTTAGGGAGTGGACCGGAACTTTGTATATGGTCATTACTTGCCCTGAGgtaa---aacatatatctgttt-----atggttatcaatg-gctgctggatacttcca--gatattttattaaaataactgaattttgttaatttcag---------------------------------