1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ttttgcgtgctctttgattgtaggaggctacaatgattgcatgaattatttgatattgatatttgttgtattttgtaaaataaacctgcttttgctacagCCAGCACTGGTTCATTTCAAGATTAGATGGCGCCTCTGTTACAGCTGGTGGATTTCCTCCCCAGAACGACAATGTACTGATAGTTACAACTTCCTCAAAT
species | Glycine max |
transcript | GLYMA17G35220.1 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GCTGTGAACTGCTTTGGGGATATATATGTATTTAACTTGGAGATACTAAG CCAGCACTGGTTCATTTCAAGATTAGATGGCGCCTCTGTTACAGCTGGTGGEST: gi|5760461|gb|AI965824.1|AI965824
genomic: GCTGTGAACTGCTTTGGGGATATATATGTATTTAACTTGGAGATACTAAGgtattgtttc ... tttgctacagCCAGCACTGGTTCATTTCAAGATTAGATGGCGCCTCTGTTACAGCTGGTGG
EST: GCTGTGAACTGCTTTGGGGATATATATGTATTTAACTTGGAGATACTAAG CCAGCACTGGTTCATTTCAAGATTAGATGGCGCCTCTGTTACAGCTGGTGG
genomic: GCTGTGAACTGCTTTGGGGATATATATGTATTTAACTTGGAGATACTAAGgtattgtttc ... tttgctacagCCAGCACTGGTTCATTTCAAGATTAGATGGCGCCTCTGTTACAGCTGGTGG
ttatttgatattgatatttgttgtattttgtaaaataaacctgcttttgctacagCCAGCACTGGTTCATTTCAAGATTAGATGGCGCCTCTGTTACAGCTGGTGGATTTCCTCCCCAGAACGACAATGTACTGATAGTTACAACTTCCTCAAAT
tattgat putative branch site (score: 3)
cctgctttt putative PPT
tgatattgatatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgcgtgctctttgattgtaggaggctacaatgattgcatgaattatttgatattgatatttgttgtattttgtaaaataaacctgcttttgctacagCCAGCACTGGTTCATTTCAAGATTAGATGGCGCCTCTGTTACAGCTGGTGGATTTCCTCCCCAGAACGACAATGTACTGATAGTTACAACTTCCTCAAAT
- -tgcgtgc
- - - - - - - - - - - - -ggctaca
- - - - - - - - - - - - - - - - - - - gcatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacctgc