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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccctttctttctttctctttccaaatcaaattcaaaattcaacatctctttaattaatttttcctttttaatttcttcaattttctttttctctgttgtgatagTTGAAATGCGGGAGATGCGGAGAACTGAGCCAGAAAGAAACCTGCGTCGTCTTAAACGACACCGTTCCTCTCCCCGTTGGCAAGAGCACCACTCATCTCA

Basic information

species Glycine max
transcript GLYMA17G34940.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9204960|gb|BE331184.1|BE331184
EST:     TGCAACCCCAAGATGGCTGCGACGACCCCAACTTCTCCTACCTCTTCAAG                         TTGAAATGCGGGAGATGCGGAGAACTGAGCCAG-AA-AAACCTGCGTCGTC
genomic: TGCAACCCCAAGATGGCTGCGACGACCCCAACTTCTCCTACCTCTTCAAGgtccctttct ... gttgtgatagTTGAAATGCGGGAGATGCGGAGAACTGAGCCAGAAAGAAACCTGCGTCGTC
EST: gi|58014583|gb|CX701325.1|CX701325
EST:     TGCAACCCCAAGATGGTTGCGACGACCCCAATTTTTCTTACTTCTTCAAG                         TTGAAATGCGGGAGATGCGGAGAATTGAGCCAGAAAGAAACTTGCGTCGTT
genomic: TGCAACCCCAAGATGGCTGCGACGACCCCAACTTCTCCTACCTCTTCAAGgtccctttct ... gttgtgatagTTGAAATGCGGGAGATGCGGAGAACTGAGCCAGAAAGAAACCTGCGTCGTC
EST: gi|192326020|gb|FK016202.1|FK016202
EST:     TGCAACCCCAAGATGGCTGCGACGACCCCAACTTCTCCTACCTCTTCAAG                         TTGAAATGCGGGAGATGCGGAGAACTGAGCCAGAAAGAAACCTGCGTCGTC
genomic: TGCAACCCCAAGATGGCTGCGACGACCCCAACTTCTCCTACCTCTTCAAGgtccctttct ... gttgtgatagTTGAAATGCGGGAGATGCGGAGAACTGAGCCAGAAAGAAACCTGCGTCGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaattaatttttcctttttaatttcttcaattttctttttctctgttgtgatagTTGAAATGCGGGAGATGCGGAGAACTGAGCCAGAAAGAAACCTGCGTCGTCTTAAACGACACCGTTCCTCTCCCCGTTGGCAAGAGCACCACTCATCTCA
                ttttaat  putative branch site (score: 3)
        tttttcctttttaatt  CT-rich tract
     taatttttccttttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtccctttctttctttctctttccaaatcaaattcaaaattcaacatctctttaattaatttttcctttttaatttcttcaattttctttttctctgttgtgatagTTGAAATGCGGGAGATGCGGAGAACTGAGCCAGAAAGAAACCTGCGTCGTCTTAAACGACACCGTTCCTCTCCCCGTTGGCAAGAGCACCACTCATCTCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA