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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATGTGGTGGTAAAGCTTCAGAAGGGGTTTTTGTTGGTGCTTTCCTTTCCATGTCTTCAACAGCAGTGgtatatcaacataaccaatctaattcgatctcatttttaaaatgcagatgcttcttgtttggacttctggttgtatacttcggttttggtttcttatacactcttttttggtttag

Basic information

species Glycine max
transcript GLYMA17G34780.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G34780.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ26360 (Selaginella moellendorffii), 5'ss of exon 9
CTATGTGGTGGTAAAGCTTCAGAAGGGGTTTTTGTTGGTGCTTTCCTTTCCATGTCTTCAACAGCAGTGgtatatcaacataaccaatctaattcgatctcatttttaaaatgcagatgcttcttgtttggacttctggttgtatacttcggttttggtttcttatacactcttttttggtttag
 | | |||||  ||    ||||| || ||||||||||||||||||||||| ||||| || ||||||||||||||           | | |  || | |   |  |   ||  || || |||  |    |   | ||   || |  | |    ||   |                           
ATTTTTGGTGCGAACATCTCAGAGGGAGTTTTTGTTGGTGCTTTCCTTTCGATGTCATCCACAGCAGTGgtata-----------attttgtttaggtagtacct---aatagcggacgctattgagctactcatcgaatt-tgcattctttttacag---------------------------

upper sequence: GLYMA17G34780.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ14698 (Selaginella moellendorffii), 5'ss of exon 9
CTATGTGGTGGTAAAGCTTCAGAAGGGGTTTTTGTTGGTGCTTTCCTTTCCATGTCTTCAACAGCAGTGgtatatcaacataaccaatctaattcgatctcatttttaaaatgcagatgcttcttgtttggacttctggttgtatacttcggttttggtttcttatacactcttttttggtttag
 | | |||||  ||    ||||| || || |||||||||||||||||||| ||||| || ||||||||||||||           | | |  || | |   |  |   ||  || || |||  |    |   | ||   || |  | |    ||   |                           
ATTTTTGGTGCGAACATCTCAGAGGGAGTCTTTGTTGGTGCTTTCCTTTCGATGTCGTCCACAGCAGTGgtata-----------attttgtttaggtagtacct---aatagcggacgctattgagctactcatcgaatt-tgcattctttttacag---------------------------