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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgttatggaattttccttggcttgttatccatttaagttatactgtaattcttggttactgtataatctttgcttcttttttgttttcttgtaatgcagCATGGTGGAAATCTTACAATACCAGCAGATAGGTTCTTGCATGAGATAGCCTTTAAGCTTTGGAAAGCTCCCAAGTATGGAGCCTGATTTTTTTTTTTCC

Basic information

species Glycine max
transcript GLYMA17G34750.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G34750.3 (Glycine max), 3'ss of exon 4
lower sequence: Vv04s0008g01340.t01 (Vitis vinifera), 3'ss of exon 5
-ctgttatggaattttccttggcttgttatccatttaagttatactgtaattcttggttactgtataat-ctttgcttcttttttgttttcttgtaatgcagCATGGTGGAAATCTTACAATACCAGCAGATAGGTTCTTGCATGAGATAGCCTTTAAGCTTTGGAAAGCTCCCAAGTATGGAGCCTGATTTTTTTTTTTCC
    || |    | | ||||    | |   ||| |  | || |  |    |    |||  || || | | |||| |    |  | || ||  |  |||||||||||| ||||||||||||||||||||||| |||||  |||||||| |||| || ||||| ||||| || |||||||| || || |||  |    |    |
cagatttttttttctcccttaaggtttccaccaatatatttgttgtagcttgtaaggtgtctttacacttctttacagagtgctagtctttct--aatgcagCATGGAGGAAATCTTACAATACCAGCAGACAGGTTTCTGCATGAGGTAGCGTTCAAGCTGTGGAAGGCCCCCAAGTACGGCGCATGAAGTGAACTCACTC

upper sequence: GLYMA17G34750.3 (Glycine max), 3'ss of exon 4
lower sequence: EFJ28055 (Selaginella moellendorffii), 3'ss of exon 5
ctgttatggaattttccttggcttgttatccatttaagttatactgtaattcttggttactgtataatctttgcttcttttttgttttcttgtaatgcagCATGGTGGAAATCTTACAATACCAGCAGATAGGTTCTTGCATGAGATAGCCTTTAAGCTTTGGAAAGCTCCCAAGTATGGAGCCTGATTTTTTTTTTTCC---
                                         ||| ||  | | || |  |  | || |   || |        || || || ||   ||| |  | || ||||||||||| |  ||||| |||||| | |||||| | || ||||||||||||||||| || |||||||| || | |   |  |         
----------------------------------------gtaccgtg-tgcctgttggcgttttattaagtgttctaacggcgtgttgttttatgtcagaaatgcgggaatcttacaattctggcagACAGGTTCCTCCATGAGGTTGCTTTTAAGCTTTGGAAAGCACCAAAGTATGGTGCATAAGAATGGTAACGGTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254327341|gb|GR836950.1|GR836950
EST:     TGACTCGCAAGGATAATGCAGAGAGATTTTCTTTTGAAGATTTTATGGAG                         CATGGTGGAAATCTTACAATACCAGCAGATAGGTTCTTGCATGAGATAGCC
genomic: TGACTCGCAAGGATAATGCAGAGAGATTTTCTTTTGAAGATTTTATGGAGgtttgtttca ... tgtaatgcagCATGGTGGAAATCTTACAATACCAGCAGATAGGTTCTTGCATGAGATAGCC
EST: gi|31561724|gb|CD487562.1|CD487562
EST:     TGACTCGCAAGGATAATGCAGAGAGATTTTCTTTTGAAGATTTTATGGAG                         CATGGTGGAAATCTTACAATACCAGCAGATAGGTTCTTGCATAGAGATAGC
genomic: TGACTCGCAAGGATAATGCAGAGAGATTTTCTTTTGAAGATTTTATGGAGgtttgtttca ... tgtaatgcagCATGGTGGAAATCTTACAATACCAGCAGATAGGTTCTTGCAT-GAGATAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaattcttggttactgtataatctttgcttcttttttgttttcttgtaatgcagCATGGTGGAAATCTTACAATACCAGCAGATAGGTTCTTGCATGAGATAGCCTTTAAGCTTTGGAAAGCTCCCAAGTATGGAGCCTGATTTTTTTTTTTCC
                      tctttgcttctttttt  CT-rich tract
                             ttcttttttgtttt  TA-rich tract