1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctgttatggaattttccttggcttgttatccatttaagttatactgtaattcttggttactgtataatctttgcttcttttttgttttcttgtaatgcagCATGGTGGAAATCTTACAATACCAGCAGATAGGTTCTTGCATGAGATAGCCTTTAAGCTTTGGAAAGCTCCCAAGTATGGAGCCTGATTTTTTTTTTTCC
species | Glycine max |
transcript | GLYMA17G34750.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGACTCGCAAGGATAATGCAGAGAGATTTTCTTTTGAAGATTTTATGGAG CATGGTGGAAATCTTACAATACCAGCAGATAGGTTCTTGCATGAGATAGCCEST: gi|31561724|gb|CD487562.1|CD487562
genomic: TGACTCGCAAGGATAATGCAGAGAGATTTTCTTTTGAAGATTTTATGGAGgtttgtttca ... tgtaatgcagCATGGTGGAAATCTTACAATACCAGCAGATAGGTTCTTGCATGAGATAGCC
EST: TGACTCGCAAGGATAATGCAGAGAGATTTTCTTTTGAAGATTTTATGGAG CATGGTGGAAATCTTACAATACCAGCAGATAGGTTCTTGCATAGAGATAGC
genomic: TGACTCGCAAGGATAATGCAGAGAGATTTTCTTTTGAAGATTTTATGGAGgtttgtttca ... tgtaatgcagCATGGTGGAAATCTTACAATACCAGCAGATAGGTTCTTGCAT-GAGATAGC
gtaattcttggttactgtataatctttgcttcttttttgttttcttgtaatgcagCATGGTGGAAATCTTACAATACCAGCAGATAGGTTCTTGCATGAGATAGCCTTTAAGCTTTGGAAAGCTCCCAAGTATGGAGCCTGATTTTTTTTTTTCC
tctttgcttctttttt CT-rich tract
ttcttttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgttatggaattttccttggcttgttatccatttaagttatactgtaattcttggttactgtataatctttgcttcttttttgttttcttgtaatgcagCATGGTGGAAATCTTACAATACCAGCAGATAGGTTCTTGCATGAGATAGCCTTTAAGCTTTGGAAAGCTCCCAAGTATGGAGCCTGATTTTTTTTTTTCC
-tgttatg
- - - - - - -ttccttg
- - - - - - - - - - gcttgtt
- - - - - - - - - - - - - - -ccattta
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gttactg