1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttcccttcttctcaatccatgacccctttgtgtttgtaataatgtctaacacacgcttctcaattattattttttcccatttgtgcccctgccggattcaaattcacttgaatatgtagttttcagAAAGCGAGGATGAGAGGACAGTTAGAGAATTTGCAGTGCTGCTGGATGCATGCCACACTTATTCAAATATG
species | Glycine max |
transcript | GLYMA17G34750.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCTCTATCTTCCTGCGGTTTTTTGAGTCTCCCAAATTCTCCCCCATCAG AAAGCGAGGATGAGAGGACAGTTAGAGAATTTGCAGTGCTGCTGGATGCATEST: gi|193579251|gb|FK533877.1|FK533877
genomic: TTCTCTATCTTCCTGCGGTTTTTTGAGTCTCCCAAATTCTCCCCCATCAGgttcccttct ... tagttttcagAAAGCGAGGATGAGAGGACAGTTAGAGAATTTGCAGTGCTGCTGGATGCAT
EST: TTCTCTATCTTCCTGCGGTTTTTTGAGTCTCCCAAATTCTCCCCCATCAG AAAGCGAGGATGAGAGGACAGTTAGAGAATTTGCAGTGCTGCTGGATGCATEST: gi|192307543|gb|FK002047.1|FK002047
genomic: TTCTCTATCTTCCTGCGGTTTTTTGAGTCTCCCAAATTCTCCCCCATCAGgttcccttct ... tagttttcagAAAGCGAGGATGAGAGGACAGTTAGAGAATTTGCAGTGCTGCTGGATGCAT
EST: TTCTCTATCCTCCTGCGGTTTTTTGAGTCTCCCAAATTCTCCCCCATCAG AAAGCGAGGATGAGAGGACAGTTAGAGAATTTGCAGTGCTGCTGGATGCATEST: gi|9898993|gb|BE607961.1|BE607961
genomic: TTCTCTATCTTCCTGCGGTTTTTTGAGTCTCCCAAATTCTCCCCCATCAGgttcccttct ... tagttttcagAAAGCGAGGATGAGAGGACAGTTAGAGAATTTGCAGTGCTGCTGGATGCAT
EST: TTCTCTATCTTCCTGCGGTTTTTTGAGTCTCCCAAATTCTCCCCCATCAG AAAGCGAGGATGAGAGGACAGTTAGAGAATTTGCAGTGCTGCTGGATGCATEST: gi|192327694|gb|FK021343.1|FK021343
genomic: TTCTCTATCTTCCTGCGGTTTTTTGAGTCTCCCAAATTCTCCCCCATCAGgttcccttct ... tagttttcagAAAGCGAGGATGAGAGGACAGTTAGAGAATTTGCAGTGCTGCTGGATGCAT
EST: TTCTCTATCTTCCTGCGGTTTTTTGAGTCTCCCAAATTCTCCCCCATCAG AAAGCGAGGATGAGAGGACAGTTAGAGAATTTGCAGTGCTGCTGGATGCATEST: gi|192333679|gb|FK026896.1|FK026896
genomic: TTCTCTATCTTCCTGCGGTTTTTTGAGTCTCCCAAATTCTCCCCCATCAGgttcccttct ... tagttttcagAAAGCGAGGATGAGAGGACAGTTAGAGAATTTGCAGTGCTGCTGGATGCAT
EST: TTCTCTATCTTCCTGCGGTTTTTTGAGTCTCCCAAATTCTCCCCCATCAG AAAGCGAGGATGAGAGGACAGTTAGAGAATTTGCAGTGCTGCTGGATGCATEST: gi|192331963|gb|FK024507.1|FK024507
genomic: TTCTCTATCTTCCTGCGGTTTTTTGAGTCTCCCAAATTCTCCCCCATCAGgttcccttct ... tagttttcagAAAGCGAGGATGAGAGGACAGTTAGAGAATTTGCAGTGCTGCTGGATGCAT
EST: TTCTCTATCTTCCTGCGGTTTTTTGAGTCTCCCAAATTCTCCCCCATCAG AAAGCGAGGATGAGAGGACAGTTAGAGAATTTGCAGTGCTGCTGGATGCAT
genomic: TTCTCTATCTTCCTGCGGTTTTTTGAGTCTCCCAAATTCTCCCCCATCAGgttcccttct ... tagttttcagAAAGCGAGGATGAGAGGACAGTTAGAGAATTTGCAGTGCTGCTGGATGCAT
ttttcccatttgtgcccctgccggattcaaattcacttgaatatgtagttttcagAAAGCGAGGATGAGAGGACAGTTAGAGAATTTGCAGTGCTGCTGGATGCATGCCACACTTATTCAAATATG
ttttc CT-rich tract
attcaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcccttcttctcaatccatgacccctttgtgtttgtaataatgtctaacacacgcttctcaattattattttttcccatttgtgcccctgccggattcaaattcacttgaatatgtagttttcagAAAGCGAGGATGAGAGGACAGTTAGAGAATTTGCAGTGCTGCTGGATGCATGCCACACTTATTCAAATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA