1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAGGGGCAAATCAGTGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAGgtattctcttttatttgtttgttttccattttccattttgttgtttgtagagattaaattaatcatttgatatgtttagataaaattctctatagcattt...
species | Glycine max |
transcript | GLYMA17G34750.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGTGATCGTGACAACCAAGAGGATCCACCAAAACAAATCTTGCCTGATAG GTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTCEST: gi|19934413|gb|BQ079443.1|BQ079443
genomic: AGTGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAGgtattctctt ... ttcaatacagGTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTC
EST: AGTGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAG GTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTCEST: gi|9898993|gb|BE607961.1|BE607961
genomic: AGTGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAGgtattctctt ... ttcaatacagGTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTC
EST: AGTGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAG GTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTCEST: gi|19936734|gb|BQ080993.1|BQ080993
genomic: AGTGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAGgtattctctt ... ttcaatacagGTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTC
EST: AGTGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAG GTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTCEST: gi|192327694|gb|FK021343.1|FK021343
genomic: AGTGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAGgtattctctt ... ttcaatacagGTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTC
EST: AGTGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAG GTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTCEST: gi|6747524|gb|AW317980.1|AW317980
genomic: AGTGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAGgtattctctt ... ttcaatacagGTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTC
EST: AGTGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAG GTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTCEST: gi|192333679|gb|FK026896.1|FK026896
genomic: AGTGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAGgtattctctt ... ttcaatacagGTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTC
EST: AGTGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAG GTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTCEST: gi|254327341|gb|GR836950.1|GR836950
genomic: AGTGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAGgtattctctt ... ttcaatacagGTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTC
EST: GACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAG GTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTCEST: gi|12773515|gb|BG238442.1|BG238442
genomic: GACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAGgtattctctt ... ttcaatacagGTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTC
EST: GACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAG GTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTCEST: gi|192331963|gb|FK024507.1|FK024507
genomic: GACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAGgtattctctt ... ttcaatacagGTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTC
EST: AGTGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAG GTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTCEST: gi|9258809|gb|BE346956.1|BE346956
genomic: AGTGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAGgtattctctt ... ttcaatacagGTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTC
EST: TGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAG GTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTC
genomic: TGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAGgtattctctt ... ttcaatacagGTTTATCGGAATGAAAGCTGCTATTTTGACCAACAATTCAAGCTTGAAGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGGGCAAATCAGTGATCGTGACAACCAAGAGGATCCACCAAAACAAACCTTGCCTGATAGgtattctcttttatttgtttgttttccattttccattttgttgtttgtagagattaaattaatcatttgatatgtttagataaaattctctatagcattt
- - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - GAGGAT