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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTTATAACCTTCTTCGCACAAGAGATTCATTAATGCGTCATAGCAAGGAGTTTAAAATTCCAATAGAATGGATGCTTGACAATGGAATTATTGGCAAGgtacaccaccatactgttcatcaattcttacaaattgtaaatgattaagtttataaacggaaactatggtatttgccatcacaatactgagatcataaca...

Basic information

species Glycine max
transcript GLYMA17G34720.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G34720.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv10s0003g05680.t01 (Vitis vinifera), 5'ss of exon 5
AGTTTATAACCTTCTTCGCACAAGAGATTCATTAATGCGTCATAGCAAGGAGTTTAAAATTCCAATAGAATGGATGCTTGACAATGGAATTATTGGCAAGgtacaccaccatactgttcatcaattcttacaaattgtaaatgattaagtttataaacggaaactatggtatttgccatcacaatactgagatcataaca-----
 || ||||||||| | || |||||||| ||||| |||||| || | ||||||||  ||||||| | ||| ||||||||||||||||| |||||    |||||| |  |   |  | ||       || | |||| ||    |||     ||| | ||  |  ||| ||    || |   ||        | |  | |        
TGTATATAACCTTTTCCGAACAAGAGAATCATTGATGCGTAATTGTAAGGAGTTCCAAATTCCCACAGATTGGATGCTTGACAATGGGATTATAAATAAGgtaaagtaatctcatattgtgtttatcattcaaaatgatcgtgaagttattt-tgaatcggcactttg----tttctgccatggggtgaaaactacagaggcttg