Sequence
atgc intronic sequence ATGC exonic sequenceGGATTCTTCAAATGGAGGACTCTCTGATGCACCAGATGTTTCTGATGTTCGTAGCAGCATGATTGGAGAAATTGAGAACCGTTCATCGCATTTGCTTGCTgtgagtacttttccactttatgcacataagttcagcctctttgtttttcatgagaaattcttttatgatattagattatagatggttttagctacctggt...
Basic information
species | Glycine max |
transcript | GLYMA17G34720.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G34720.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os08g03560.2 (Oryza sativa), 5'ss of exon 3
GGATTCTTCAAATGGAGGACTCTCTGATGCACCAGATGTTTCTGATGTTCGTAGCAGCATGATTGGAGAAATTGAGAACCGTTCATCGCATTTGCTTGCTgtgagta-------cttttccactttatgcacataagttcagcctctttgtttttcatgagaaattctt---ttatgatattagattatagatggtt--ttagctacctggt---------
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GGATACTTCTGGGAGTGGAATCTGTGAAACTGCTAACTCAGCAAATGTGCGGAGTAGCATGATTGGTGAAATTGAGAACCGTTCTTCGCATTTGCAGGCTgtaagtagaatattctgctcagattattggacatatgt--agaattgtagataccaatgaaaagctagctggttctcgcactgatgtatggctatttactttactctttgttcattttcag
upper sequence: GLYMA17G34720.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv10s0003g05680.t01 (Vitis vinifera), 5'ss of exon 2
GGATTCTTCAAATGGAGGACTCTCTGATGCACCAGATGTTTCTGATGTTCGTAGCAGCATGATTGGAGAAATTGAGAACCGTTCATCGCATTTGCTTGCTgtgagtactt-------ttccactttatgcacataagttcagcctctttgtttttcatgagaaattcttttatgatattagattatagatggttttagctacctggt
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GGATTCTTCAAATGGAGGAATCTATGATACCCCTGATGTTGCAAATGTTCGAAGCAACATGATTGGTGAAATTGAGAATCGGTCATCATATTTGCTTGCCgtgagtacttgctaatttctcactcaatttgtcatttttcagcccatttgtcctcgagctaggatgttttaatggaaaatgattgtgg---gtcccaagttct----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193402065|gb|FK368852.1|FK368852EST: ACCGTTCATCGCATTTGCTTGCT ATAAAGGCAGATATTGAAACTCAGGGAGAATTCGTGAATTCATTGATAAGA
genomic: ACCGTTCATCGCATTTGCTTGCTgtgagtactt ... atgtatgtagATAAAGGCAGATATTGAAACTCAGGGAGAATTCGTGAATTCATTGATAAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGATTCTTCAAATGGAGGACTCTCTGATGCACCAGATGTTTCTGATGTTCGTAGCAGCATGATTGGAGAAATTGAGAACCGTTCATCGCATTTGCTTGCTgtgagtacttttccactttatgcacataagttcagcctctttgtttttcatgagaaattcttttatgatattagattatagatggttttagctacctggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA