Sequence
atgc intronic sequence ATGC exonic sequenceCGTGAATTCATTGATAAGAGAGGTGAACGATGCAGTTTATCAGAACATAGAAGATGTAGTGGCATTTGTGAAGTGGCTGGATGATGAACTTTGCTTCCTTgtaagttactttttatttatgacccgtataccttgaaattatgccatgtacaaattatggtataaactttgctactttcagctttagtaaataggttcaa...
Basic information
species | Glycine max |
transcript | GLYMA17G34720.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G34720.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os08g03560.2 (Oryza sativa), 5'ss of exon 4
CGTGAATTCATTGATAAGAGAGGTGAACGATGCAGTTTATCAGAACATAGAAGATGTAGTGGCATTTGTGAAGTGGCTGGATGATGAACTTTGCTTCCTTgtaagttactttttatttatgacccgtataccttgaa-attatgccatgtacaaattatggtataaactttgctactttcagctttagtaaataggttcaa
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TGTGAAATCATTGATCAAGGAGGTGACCAATGCAGCTTACAAAGATATAGAAGATGTGGTTGCATTTGTGAAATGGCTTGATGATGAGCTTGGTTTCCTGgtatgaa------tgttcagtagcactatactctgagcaatttactttgttttttcactcatgtaa-ttgcattacttgaag-------------------
upper sequence: GLYMA17G34720.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G019225_T01 (Zea mays), 5'ss of exon 5
CGTGAATTCATTGATAAGAGAGGTGAACGATGCAGTTTATCAGAACATAGAAGATGTAGTGGCATTTGTGAAGTGGCTGGATGATGAACTTTGCTTCCTTgtaagttactttttattt--atgacccgta-taccttgaaattatgccatgtacaaattatggtataaactttgcta--ctttcagctttagtaaat-aggttcaa
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TGTGAAATCATTAATCAAGGAGGTGACTAGTGCAGCCTACAAAGATATCGAAGATGTGGTTGCATTTGTGAAGTGGTTAGATGATGAACTTGGCTTCCTAgtatgttcattacaatctcactgatttatcctgatttctgagta-atcattttcagttggagctgccacttaaattattcttttaacttaattgccttacgtccag
upper sequence: GLYMA17G34720.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv10s0003g05680.t01 (Vitis vinifera), 5'ss of exon 3
CGTGAATTCATTGATAAGAGAGGTGAACGATGCAGTTTATCAGAACATAGAAGATGTAGTGGCATTTGTGAAGTGGCTGGATGATGAACTTTGCTTCCTTgtaagttactttttatttatgacccgtataccttg-aaattatgccatgtacaaattatggtataaactttgctactttcagctttagtaaataggttcaa----
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TGTGAACTCTTTGATAAGAGAGGTCAATAATGCAGTTTATCAGAACATTGAAGATGTTGTTGCATTTGTGAAGTGGCTTGATGATGAGCTTTGCTTTCTTgtaagttgatcattatcatatataagttaacctcgtgaactttgt--tggctaaattttgg---aaattatacaaattcaatttggggaagtcaaatacataaacMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193402065|gb|FK368852.1|FK368852EST: AAGATGTAGTGGCATTTGTGAAGTGGCTGGATGATGAACTTTGCTTCCTT GTGGATGAGAGGGCTGTCCTTAAGCATTTTGATTGGCCAGAAAAGAAAGCT
genomic: AAGATGTAGTGGCATTTGTGAAGTGGCTGGATGATGAACTTTGCTTCCTTgtaagttact ... gcattcaaagGTGGATGAGAGGGCTGTCCTTAAGCATTTTGATTGGCCAGAAAAGAAAGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGTGAATTCATTGATAAGAGAGGTGAACGATGCAGTTTATCAGAACATAGAAGATGTAGTGGCATTTGTGAAGTGGCTGGATGATGAACTTTGCTTCCTTgtaagttactttttatttatgacccgtataccttgaaattatgccatgtacaaattatggtataaactttgctactttcagctttagtaaataggttcaa
- - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA