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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGAGAAGTGGATAAATCTCCTGGTTCTGTCAGAACTGTTGCCTGGCTTCATAGTGACCAGACAATATTGAGTTCTTGTACTGATATGGGAGGTGTCAGgtatatcctccattaagccatttgatactgaaagcttgtctgtgttgtaaatcgtgtgctagctttcttgtttttaatatatatatatatagcattggatactatatattgcactgaatctagttgatgtttcacag

Basic information

species Glycine max
transcript GLYMA17G12770.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12770.2 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os02g11060.1 (Oryza sativa), 5'ss of exon 4
CCAGAGAAGTGGATAAATCTCCTGGTTCTGTCAGAACTGTTGCCTGGCTTCATAGTGACCAGACAATATTGAGTTCTTGTACTGATATGGGAGGTGTCAGgtatatcctccattaagccatttgatactgaaagcttgtctgtgttgtaaatcgtgtgctagctttcttgtttttaatatatatatatatagcattggatactatatattgcactgaatctagttgatgtttcacag
| |||||  | || ||||||||||| ||||||||||||||||| |||||||||||||||||  | ||||| ||||  || ||||||||||| || || |||| | ||     ||   || |||            || ||   | |     | |  |  |  ||| | |||| | | ||  | |     | |  | | |   |   ||  | |   ||                   
CAAGAGAGATTGACAAATCTCCTGGCTCTGTCAGAACTGTTGCTTGGCTTCATAGTGACCAATCTATATTAAGTTGCTGCACTGATATGGGTGGCGTAAGgtgtgtctgaattt---cctttt-----------tttttcccagcttagggttgcttttttccttccctgttatgattac-tgt---cgtggtgtagaagtttgattacagtaacaaa-------------------

upper sequence: GLYMA17G12770.2 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os06g39760.1 (Oryza sativa), 5'ss of exon 4
CCAGAGAAGTGGATAAATCTCCTGGTTCTGTCAGAACTGTTGCCTGGCTTCATAGTGACCAGACAATATTGAGTTCTTGTACTGATATGGGAGGTGTCAGgtatatcctccattaag----ccatttgatactgaaagcttgtctgtgttgtaaatcgtgtgctagctttcttgtttttaatatatatatat-atagcattggatactatatattgcactgaatctagttgatgtttcacag
| |||||| | || ||| | ||||||   ||  |||||||||| |||||||||||||| || |||||| | || || ||  ||||||||||||| || |||| | ||    |  ||      ||||  |||   | ||||  |     ||||   | || |  | |   | |||||  |  ||| ||  | | || ||| || | |                                    
CAAGAGAACTTGACAAAGCACCTGGTAACGTGCGAACTGTTGCTTGGCTTCATAGTGATCAAACAATACTAAGCTCGTGCTCTGATATGGGAGGAGTAAGgtgtgtctggaaaaaatatcttcattctataggaagagctgctaccatttgttcctagtttatt-gtaattttgttcctcttatttaattgttatggcactgcacag-----------------------------------

upper sequence: GLYMA17G12770.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G105398_T01 (Zea mays), 5'ss of exon 4
CCAGAGAAGTGGATAAATCTCCTGGTTCTGTCAGAACTGTTGCCTGGCTTCATAGTGACCAGACAATATTGAGTTCTTGTACTGATATGGGAGGTGTCAGgtatatcctccattaagccatttgatactgaaagcttgtctgtgttgtaaatcgtgtgctagctttcttgtttttaatatatatatatatagcattggatactatatattgcactgaatctagttgatgtttcacag
| |||||  | || ||||| |||||||||||| |||||| ||||||||||||||||||||| || ||||||||||| || ||||| ||||| || || |||| | | | |     |     ||   | |||| |||   |  |    || |  |   | | || |   | | |||| ||||  | |   |    ||   || | | ||| | ||||  |  ||              
CAAGAGAGCTTGACAAATCACCTGGTTCTGTCCGAACTGCTGCCTGGCTTCATAGTGACCAAACTATATTGAGTTCCTGCACTGACATGGGTGGAGTAAGgtgtgtgcacggaagaaatgctt--caatgaatgctaaacatt----tatactg---gttggcatatatatatttactatagctgtgc-tccttttaattattttttatggtactg--tgcag--------------

upper sequence: GLYMA17G12770.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G022275_T02 (Zea mays), 5'ss of exon 4
CCAGAGAAGTGGATAAATCTCCTGGTTCTGTCAGAACTGTTGCCTGGCTTCATAGTGACCAGACAATATTGAGTTCTTGTACTGATATGGGAGGTGTCAGgtatatcctccattaagccatttgatactgaaagcttgtctgtgttgtaaatcgtgtgctagctttcttgtttttaatatatatatatatagcattggatactata-tattgcactgaatctagttgatgtttcacag
| |||||  | || ||||| |||||||| ||| |||||| ||| ||||||||||||||||| || ||||||||||| || ||||| ||||| || || |||| | | |       |      | | |   |     |   | | |  |   | |  |      || | |  | |   | |||   ||| ||  |||  ||  |||  ||  |  | |                     
CAAGAGAGCTTGACAAATCACCTGGTTCCGTCCGAACTGCTGCTTGGCTTCATAGTGACCAAACTATATTGAGTTCCTGCACTGACATGGGTGGAGTAAGgtgtgtgcatggaagaaatgcctca-atcaatgatatacatttatactggttggcctctatatttacctactatagctgtattcctat-ta--attcaattttatggtaccgtgcag---------------------

upper sequence: GLYMA17G12770.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv11s0016g04710.t01 (Vitis vinifera), 5'ss of exon 4
CCAGAGAAGTGGATAAATCTCCTGGTTCTGTCAGAACTGTTGCCTGGCTTCATAGTGACCAGACAATATTGAGTTCTTGTACTGATATGGGAGGTGTCAGgta-tatcctccattaagccatttgatactgaaagcttgtctgtgttgtaaatcgtgtgctagctttcttgtttttaatatatatatatatagcattggatactatatattgcactgaatctagttgatgtttcacag
| |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||| || |||||||| ||||| ||||| ||||| || ||||| |||||  ||     || ||  ||  || |  |  |        ||| || | | |  |    |   ||| ||  | | ||  |   | |||      || |  ||                                   
CTAGAGAAGTGGATAATTCTCCTGGTTCAGTCAGAACTGTTGCATGGCTCCATAGTGATCAAACAATATTAAGTTCGTGTACAGATATTGGGGGTGTAAGgtagcatttcttatgaaatcacatgcttttacagctacagttgtcttatgatttcttcattttattttttaatatgaactt---tgtatgacttgttagtgac-----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208336897|gb|GE135581.1|GE135581
EST:     TAGTGACCAGACAATATTGAGTTCTTGTACTGATATGGGAGGTGTCAG                         GTTATGGGATGTAAGAAGTGGTAAAATAGTCCAGACACTGGAAACCAAGTC
genomic: TAGTGACCAGACAATATTGAGTTCTTGTACTGATATGGGAGGTGTCAGgtatatcctc ... tgtttcacagGTTATGGGATGTAAGAAGTGGTAAAATAGTCCAGACACTGGAAACCAAGTC
EST: gi|193363152|gb|FK328300.1|FK328300
EST:     ACAATATTGAGTTCTTGTACTGATATGGGAGGTGTCAG                         GTTATGGGATGTAAGAAGTGGTAAAATAGTCCAGACACTGGAAACCAAGTC
genomic: ACAATATTGAGTTCTTGTACTGATATGGGAGGTGTCAGgtatatcctc ... tgtttcacagGTTATGGGATGTAAGAAGTGGTAAAATAGTCCAGACACTGGAAACCAAGTC
EST: gi|208315370|gb|GE113152.1|GE113152
EST:     CATAGTGACCAGACAATATTGAGTTCTTGTACTGATATGGGAGGTGTCAG                         GTTATGGGATGTAAGAAGTGGTAAAATAGTCCAGA
genomic: CATAGTGACCAGACAATATTGAGTTCTTGTACTGATATGGGAGGTGTCAGgtatatcctc ... tgtttcacagGTTATGGGATGTAAGAAGTGGTAAAATAGTCCAGA