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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atctatttagatcctcctgcaattaatgtagtgcattgtattgtcaatgttataattcattgattacaagcttactagttatctttggtttaatgtgcagGAAAGTTTGGGATGCTTTGACTGGAGATGAATTGCACTCTTTTGAGCATAAGCACATTGCTCGAGCATGTGCTTTTTCTGAG

Basic information

species Glycine max
transcript GLYMA17G12770.3
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12770.2 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os02g11060.1 (Oryza sativa), 3'ss of exon 2
atctatttagatcctcct----gcaattaatgtagtgcattgtattgtcaatgtta-taattcattgattacaagcttact--agttatctttggtttaatgtgcagGAAAGTTTGGGATGCTTTGACTGGAGATGAATTGCACTCTTTTGAGCATAAGCACATTGCTCGAGCATGTGCTTTTTCTGAG
    |     ||  ||||    | ||  || | ||   | |   | |  ||||||| || |||  | | |    | ||  |  |  | ||||   ||     ||||| ||||| ||||||||  | ||||| || ||  | ||||| || || || |||||||||| ||| ||||||||||||||||||
---aaagggcattttcctcagaggaaccaaagcagcaaagtccctag--aatgttactatttctgttactgagggtttgttttaactttcttaaattc--cttgcagTAAAGTATGGGATGCACTAACTGGTGAAGAGCTTCACTCCTTCGAACACAAGCACATTGTTCGTGCATGTGCTTTTTCTGAG

upper sequence: GLYMA17G12770.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv11s0016g04710.t01 (Vitis vinifera), 3'ss of exon 2
atctatttagatcctcctgcaattaatgtagtgcattgtattgtcaatgttataattcattgattac-----aagcttactagttatctttggtttaatg--tgcagGAAAGTTTGGGATGCTTTGACTGGAGATGAATTGCACTCTTTTGAGCATAAGCACATTGCTCGAGCATGTGCTTTTTCTGAG
      || |       ||   || || ||     |   | ||   | ||   | ||||||||||||      || || |||    |      |||  ||  || |||||| | ||||||||||| || || |||||||||||||| ||||| || |||||||||| |||||| ||||||||||| |||
------ttggtattgggtggtgttcat-taacatttcagaatgaacaagtggcatttcattgattaccaatagagtttgctaacatttcacatttttgtgcatgtagGAAAATATGGGATGCTTTAACAGGGGATGAATTGCACTCATTTGAACACAAGCACATTGTTCGAGCTTGTGCTTTTTCAGAG

upper sequence: GLYMA17G12770.2 (Glycine max), 3'ss of exon 2
lower sequence: EFJ21886 (Selaginella moellendorffii), 3'ss of exon 2
atctatttagatcctcctgcaattaatgtagtgcattgtattgtcaatgttataattcattgattacaagcttactagttatctttggtttaatgtgcagGAAAGTTTGGGATGCTTTGACTGGAGATGAATTGCACTCTTTTGAGCATAAGCACATTGCTCGAGCATGTGCTTTTTCTGAG
                                          || | ||     |||         |    || || ||  |||        ||   ||||| ||| ||||| ||| |||| |||||||||||| ||||||| ||||| |||||||| | |||| | |||||||| || |||
------------------------------------------gtaagtggccggattttcccccctc---ttttcttgt-gtctcactccagatcctcagGAGAGTGTGGGACGCTCTGACGGGAGATGAATTGTACTCTTTCGAGCACAAGCACATCGTTCGAACGTGTGCTTTCTCCGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15815353|gb|BI787628.1|BI787628
EST:     TTGGATACCAGTGCCTTACGTGCTGCAACTGCTTCTGCTGATTTCTCAAC                         GAAAGTTTGGGATGCTTTGACTGGAGATGAATTGCACTCTTTTGAGCATAA
genomic: TTGGATACCAGTGCCTTACGTGCTGCAACTGCTTCTGCTGATTTCTCAACgtatgtcatt ... taatgtgcagGAAAGTTTGGGATGCTTTGACTGGAGATGAATTGCACTCTTTTGAGCATAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgttataattcattgattacaagcttactagttatctttggtttaatgtgcagGAAAGTTTGGGATGCTTTGACTGGAGATGAATTGCACTCTTTTGAGCATAAGCACATTGCTCGAGCATGTGCTTTTTCTGAG
     tataattcattgatta  TA-rich tract