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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGTTTGGGATGCTTTGACTGGAGATGAATTGCACTCTTTTGAGCATAAGCACATTGCTCGAGCATGTGCTTTTTCTGAGgtagatttggcaatgttaacttcatactgattgagtactatgatttctgttgatatccatttctggagaaggaaaatcaatatatcaatatatgagttat...

Basic information

species Glycine max
transcript GLYMA17G12770.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12770.3 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g11060.1 (Oryza sativa), 5'ss of exon 3
GAAAGTTTGGGATGCTTTGACTGGAGATGAATTGCACTCTTTTGAGCATAAGCACATTGCTCGAGCATGTGCTTTTTCTGAGgt-agatttggcaatgttaacttcatactgattgagtactatgatttctgttgatatccatttctggagaagga--aaatcaatatatcaatatatgagttat
 ||||| ||||||||  | ||||| || ||  | ||||| || || || |||||||||| ||| |||||||||||||||||||| | |||   |     | |||  | ||   || |   || | ||  |   |  | ||  ||  |  |        |  ||    ||||| ||    | |   
TAAAGTATGGGATGCACTAACTGGTGAAGAGCTTCACTCCTTCGAACACAAGCACATTGTTCGTGCATGTGCTTTTTCTGAGgttatattctccctgacttactgta-accattttaaagct-tcataccctctcctctctcttaataaaatcttttcatttcctgctatcattacccaattgg-

upper sequence: GLYMA17G12770.3 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G105398_T01 (Zea mays), 5'ss of exon 3
GAAAGTTTGGGATGCTTTGACTGGAGATGAATTGCACTCTTTTGAGCATAAGCACATTGCTCGAGCATGTGCTTTTTCTGAGgtag-atttggc--aatgttaacttcatactgattgagtactatgatttctgttgatatccatttctggagaaggaaaatcaatatatcaatatatgagttat
 ||||| ||||||||  | ||||| |||||| | || || ||||| |||||||| || | ||| ||||||||||| ||||||||||   ||| |   || | ||     || |   ||   |||||| ||    ||        ||  | |      |||     |  |    | | | |     
TAAAGTATGGGATGCACTTACTGGTGATGAACTACATTCATTTGAACATAAGCATATAGTTCGGGCATGTGCTTTCTCTGAGgtagtgcttgtcctcatctcaatgaagtattatgtggaaactatggttatcattctggagtgttctttgcacctaaaatgttgtgcacagttctttcata---

upper sequence: GLYMA17G12770.3 (Glycine max), 5'ss of exon 3
lower sequence: Vv11s0016g04710.t01 (Vitis vinifera), 5'ss of exon 3
GAAAGTTTGGGATGCTTTGACTGGAGATGAATTGCACTCTTTTGAGCATAAGCACATTGCTCGAGCATGTGCTTTTTCTGAGgtagatttggcaatgttaactt-catactgattgagtactatgatttctgttgatatccatttctggagaaggaaaatcaatatatcaatatatgagttat-
|||| | ||||||||||| || || |||||||||||||| ||||| || |||||||||| |||||| ||||||||||| ||||||||  |    ||    || | ||||   ||  |    | | || | | |   |||| || |       | ||||||  | | |  ||   | |||  || 
GAAAATATGGGATGCTTTAACAGGGGATGAATTGCACTCATTTGAACACAAGCACATTGTTCGAGCTTGTGCTTTTTCAGAGgtagacctttggatacatacatacatatatatctatctatct-atctatctatctatctatataatatatatgaaaatataaagagaaa-ggaggaggaatt

upper sequence: GLYMA17G12770.3 (Glycine max), 5'ss of exon 3
lower sequence: EFJ21886 (Selaginella moellendorffii), 5'ss of exon 3
GAAAGTTTGGGATGCTTTGACTGGAGATGAATTGCACTCTTTTGAGCATAAGCACATTGCTCGAGCATGTGCTTTTTCTGAGgtagatttggcaatgttaacttcatactgattgagtactatgatttctgttgatatccatttctggagaaggaaaatcaatatatcaatatatgagttat
|| ||| ||||| ||| |||| |||||||||||| ||||||| ||||| |||||||| | |||| | |||||||| || |||||| ||   ||  | | |    || ||   |  |  ||| |  | | | |   | |   ||  |       |    |     || ||             
GAGAGTGTGGGACGCTCTGACGGGAGATGAATTGTACTCTTTCGAGCACAAGCACATCGTTCGAACGTGTGCTTTCTCCGAGgtaaatgctgc--tctca----cagaccactcaaaaactcttctctttctctcttttttttctttttccttgttctttttattaccag------------

upper sequence: GLYMA17G12770.3 (Glycine max), 5'ss of exon 3
lower sequence: EFJ06819 (Selaginella moellendorffii), 5'ss of exon 3
GAAAGTTTGGGATGCTTTGACTGGAGATGAATTGCACTCTTTTGAGCATAAGCACATTGCTCGAGCATGTGCTTTTTCTGAGgtagatttggcaatgttaacttcatactgattgagtactatgatttctgttgatatccatttctggagaaggaaaatcaatatatcaatatatgagttat
|| ||| ||||| ||| |||| |||||||||||| ||||||| ||||| |||||||| | |||| | |||||||| || |||||| ||   ||     | ||     ||| |   | |  | |  ||||| | | | |   | | |      |     |  || || ||             
GAGAGTGTGGGACGCTCTGACGGGAGATGAATTGTACTCTTTCGAGCACAAGCACATCGTTCGAACGTGTGCTTTCTCCGAGgtaaat---gctgctctcacagaccactcaaaaactcttctc-tttctctcgttttttttctttttccttgttctttttat-taccag------------