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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAATCAACGACCAACGCACTAGGGGCAAGTGCTATTGTTTTGTTACTTTCACAAATCCTAGGTCTGCAATTGATGCCATCAACGACATGAATGGCAGAgtatgtaatttaatagtttatcttcttttagatgttatagggtcgttaatgtttggttatgaattgtcatattgtgcttagcttatgagttttaggtatttgacactgtgttgttctgaatcag

Basic information

species Glycine max
transcript GLYMA17G12730.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12730.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv11s0016g04610.t01 (Vitis vinifera), 5'ss of exon 2
ATAATCAACGACCAACGCACTAGGGGCAAGTGCTATTGTTTTGTTACTTTCACAAATCCTAGGTCTGCAATTGATGCCATCAACGACATGAATGGCAGAgtatgtaatttaatagtttatcttcttttagatgttatagggtcgttaatgtttggttatgaattgtcatattgtgcttagcttatgagttttaggtatttgacactgtgttgttctgaatcag
|| || || || |   ||  | |||| || |||||| | |||||||| || ||||||||| | || |||||||||||||| || |||||||||||||| ||||||||    ||   || |   || | |  |  | | |  ||  |  | ||   || | ||||||  |    |              ||||||   ||||||||||     || |  || ||
ATTATTAATGAGCGGGGCGTTGGGGGAAAATGCTATGGCTTTGTTACCTTTACAAATCCTCGATCAGCAATTGATGCCATTAATGACATGAATGGCAGGgtatgtaac---attagttgtaaactgtcatgt-ctgtggtttctcttctattctattct-aattgttgttacat--------------ttttagacctttgacactgca--attttatattag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193460204|gb|FK427113.1|FK427113
EST:     TCACAAATCCTAGGTCTGCAATTGATGCCATCAACGACATGAATGGCAGA                         ACCATTGACGGG
genomic: TCACAAATCCTAGGTCTGCAATTGATGCCATCAACGACATGAATGGCAGAgtatgtaatt ... tctgaatcagACCATTGACGGG
EST: gi|208333212|gb|GE128231.1|GE128231
EST:     TCACAAATCCTAGGTCTGCAATTGATGCCATCAACGACATGAATGGCAGA                         ACCATTGACGGGCGTGTGATTAAAGTTAATGGGGTGAGGGCTCGTGGGGGC
genomic: TCACAAATCCTAGGTCTGCAATTGATGCCATCAACGACATGAATGGCAGAgtatgtaatt ... tctgaatcagACCATTGACGGGCGTGTGATTAAAGTTAATGGGGTGAGGGCTCGTGGGGGC
EST: gi|207839196|gb|GD812497.1|GD812497
EST:     TCACAAATCCTAGGTCTGCAATTGATGCCATCAACGACATGAATGGCAGA                         ACCATTGACGGGCGTGTGATTAAAGTTAATGGGGTGAGGGCTCGTGGGGGC
genomic: TCACAAATCCTAGGTCTGCAATTGATGCCATCAACGACATGAATGGCAGAgtatgtaatt ... tctgaatcagACCATTGACGGGCGTGTGATTAAAGTTAATGGGGTGAGGGCTCGTGGGGGC