Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccacttttctaactcttatctcttttagggttttaaccaacttactgtttcgccactttatttatctgattcctttcacaaataatcaattccactcattgggtttccgttttaattgccaacttttttttccttcagATAATCAACGACCAACGCACTAGGGGCAAGTGCTATTGTTTTGTTACTTTCACAAATCCTAGGTCTGCAATTGATGCCATCAACGACATGAATGGCAGA

Basic information

species Glycine max
transcript GLYMA17G12730.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12730.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv11s0016g04610.t01 (Vitis vinifera), 3'ss of exon 1
gtccacttttctaactcttatctcttttagggttttaaccaacttactgtttcg-ccactttatttatctgattcctttcacaaataatcaattccactcattgggtttccgttttaattgccaacttttttttccttcagATAATCAACGACCAACGCACTAGGGGCAAGTGCTATTGTTTTGTTACTTTCACAAATCCTAGGTCTGCAATTGATGCCATCAACGACATGAATGGCAGA
                                         |   |||| || | |||| |  || | || | |    |      |      ||||| |  || |   |    |||  ||    |  |  | |     ||||| || || || |   ||  | |||| || |||||| | |||||||| || ||||||||| | || |||||||||||||| || |||||||||||||| 
----------------------------------------gagccactgatttgtccacatgtttgaacttacttgactgctggttttatggttccatttttttgacgtttagtttc-ttaaacatatcatgtgtgaacagATTATTAATGAGCGGGGCGTTGGGGGAAAATGCTATGGCTTTGTTACCTTTACAAATCCTCGATCAGCAATTGATGCCATTAATGACATGAATGGCAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193460204|gb|FK427113.1|FK427113
EST:     AAACCATTCGCACAGTCTTCAATTTGTATGGCGCCATCCTTGATGTTAAG                         ATAATCAACGACCAACGCACTAGGGGCAAGTGCTATTGTTTTGTTACTTTC
genomic: AAACCATTCGCACAGTCTTCAATTTGTATGGCGCCATCCTTGATGTTAAGgtccactttt ... tttccttcagATAATCAACGACCAACGCACTAGGGGCAAGTGCTATTGTTTTGTTACTTTC
EST: gi|208294430|gb|GE091673.1|GE091673
EST:     AAACCATTCGCACAGTCTTCAATTTGTATGGCGCCATCCTTGATGTTAAG                         ATAATCAACGACCAACGCACTAGGGGCAAGTGCTATTGTTTTGTTACTTTC
genomic: AAACCATTCGCACAGTCTTCAATTTGTATGGCGCCATCCTTGATGTTAAGgtccactttt ... tttccttcagATAATCAACGACCAACGCACTAGGGGCAAGTGCTATTGTTTTGTTACTTTC
EST: gi|207705593|gb|GD688731.1|GD688731
EST:     AAACCATTCGCACAGTCTTCAATTTGTATGGCGCCATCCTTGATGTTAAG                         ATAATCAACGACCAACGCACTAGGGGCAAGT
genomic: AAACCATTCGCACAGTCTTCAATTTGTATGGCGCCATCCTTGATGTTAAGgtccactttt ... tttccttcagATAATCAACGACCAACGCACTAGGGGCAAGT
EST: gi|208333212|gb|GE128231.1|GE128231
EST:     AAACCATTCGCACAGTCTTCAATTTGTATGGCGCCATCCTTGATGTTAAG                         ATAACCAACGACCAACGCACTAGGGGCAAGTGCTATTGTTTTGTTACTTTC
genomic: AAACCATTCGCACAGTCTTCAATTTGTATGGCGCCATCCTTGATGTTAAGgtccactttt ... tttccttcagATAATCAACGACCAACGCACTAGGGGCAAGTGCTATTGTTTTGTTACTTTC
EST: gi|207839196|gb|GD812497.1|GD812497
EST:     GTATGGCGCCATCCTTGATGTTAAG                         ATAACCAACGACCAACGCACTAGGGGCAAGTGCTATTGTTTTGTTACTTTC
genomic: GTATGGCGCCATCCTTGATGTTAAGgtccactttt ... tttccttcagATAATCAACGACCAACGCACTAGGGGCAAGTGCTATTGTTTTGTTACTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcaattccactcattgggtttccgttttaattgccaacttttttttccttcagATAATCAACGACCAACGCACTAGGGGCAAGTGCTATTGTTTTGTTACTTTCACAAATCCTAGGTCTGCAATTGATGCCATCAACGACATGAATGGCAGA
                          ttttaat  putative branch site (score: 3)
                                ttgccaactttttttt  CT-rich tract
                                     aactttttttt  TA-rich tract