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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATGATAGCTCCATATATGTAGGGGGCCTTCCCTACGACGCCACCGAACAAACCATTCGCACAGTCTTCAATTTGTATGGCGCCATCCTTGATGTTAAGgtccacttttctaactcttatctcttttagggttttaaccaacttactgtttcgccactttatttatctgattcctttcacaaataatcaattccactcattgggtttccgttttaattgccaacttttttttccttcag

Basic information

species Glycine max
transcript GLYMA17G12730.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193460204|gb|FK427113.1|FK427113
EST:     AAACCATTCGCACAGTCTTCAATTTGTATGGCGCCATCCTTGATGTTAAG                         ATAATCAACGACCAACGCACTAGGGGCAAGTGCTATTGTTTTGTTACTTTC
genomic: AAACCATTCGCACAGTCTTCAATTTGTATGGCGCCATCCTTGATGTTAAGgtccactttt ... tttccttcagATAATCAACGACCAACGCACTAGGGGCAAGTGCTATTGTTTTGTTACTTTC
EST: gi|208294430|gb|GE091673.1|GE091673
EST:     AAACCATTCGCACAGTCTTCAATTTGTATGGCGCCATCCTTGATGTTAAG                         ATAATCAACGACCAACGCACTAGGGGCAAGTGCTATTGTTTTGTTACTTTC
genomic: AAACCATTCGCACAGTCTTCAATTTGTATGGCGCCATCCTTGATGTTAAGgtccactttt ... tttccttcagATAATCAACGACCAACGCACTAGGGGCAAGTGCTATTGTTTTGTTACTTTC
EST: gi|207705593|gb|GD688731.1|GD688731
EST:     AAACCATTCGCACAGTCTTCAATTTGTATGGCGCCATCCTTGATGTTAAG                         ATAATCAACGACCAACGCACTAGGGGCAAGT
genomic: AAACCATTCGCACAGTCTTCAATTTGTATGGCGCCATCCTTGATGTTAAGgtccactttt ... tttccttcagATAATCAACGACCAACGCACTAGGGGCAAGT
EST: gi|208333212|gb|GE128231.1|GE128231
EST:     AAACCATTCGCACAGTCTTCAATTTGTATGGCGCCATCCTTGATGTTAAG                         ATAACCAACGACCAACGCACTAGGGGCAAGTGCTATTGTTTTGTTACTTTC
genomic: AAACCATTCGCACAGTCTTCAATTTGTATGGCGCCATCCTTGATGTTAAGgtccactttt ... tttccttcagATAATCAACGACCAACGCACTAGGGGCAAGTGCTATTGTTTTGTTACTTTC
EST: gi|207839196|gb|GD812497.1|GD812497
EST:     GTATGGCGCCATCCTTGATGTTAAG                         ATAACCAACGACCAACGCACTAGGGGCAAGTGCTATTGTTTTGTTACTTTC
genomic: GTATGGCGCCATCCTTGATGTTAAGgtccactttt ... tttccttcagATAATCAACGACCAACGCACTAGGGGCAAGTGCTATTGTTTTGTTACTTTC