Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGTGCGATGGCAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACTgtaagtaatccttccacctactcaattattttttacataaagttcccatgaatcatgaatcacgatcaatttacgattagattaaccttccacttcttaatattcaaatagaaatttttatttttataaataactaactggaattatgctttgatcataagcag

Basic information

species Glycine max
transcript GLYMA17G12610.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192298126|gb|FG991406.1|FG991406
EST:     CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACT                         CTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
genomic: CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACTgtaagtaatc ... tcataagcagCTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
EST: gi|151398293|gb|EV268164.1|EV268164
EST:     CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACT                         CTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
genomic: CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACTgtaagtaatc ... tcataagcagCTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
EST: gi|11687774|gb|BF595450.1|BF595450
EST:     CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACT                         CTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
genomic: CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACTgtaagtaatc ... tcataagcagCTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
EST: gi|14258947|gb|BG881855.1|BG881855
EST:     CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACT                         CTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
genomic: CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACTgtaagtaatc ... tcataagcagCTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
EST: gi|15663121|gb|BI700492.1|BI700492
EST:     CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACT                         CTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
genomic: CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACTgtaagtaatc ... tcataagcagCTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
EST: gi|6915083|gb|AW396680.1|AW396680
EST:     CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACT                         CTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
genomic: CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACTgtaagtaatc ... tcataagcagCTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
EST: gi|23734362|gb|BU765408.1|BU765408
EST:     CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACT                         CTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
genomic: CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACTgtaagtaatc ... tcataagcagCTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
EST: gi|21286198|gb|BQ474069.1|BQ474069
EST:     CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACT                         CTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
genomic: CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACTgtaagtaatc ... tcataagcagCTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
EST: gi|15663183|gb|BI700554.1|BI700554
EST:     CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACT                         CTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
genomic: CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACTgtaagtaatc ... tcataagcagCTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
EST: gi|21285635|gb|BQ473506.1|BQ473506
EST:     CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACT                         CTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
genomic: CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACTgtaagtaatc ... tcataagcagCTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
EST: gi|15663692|gb|BI701063.1|BI701063
EST:     CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACT                         CTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
genomic: CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACTgtaagtaatc ... tcataagcagCTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
EST: gi|21479776|gb|BQ576459.1|BQ576459
EST:     CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACT                         CTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
genomic: CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACTgtaagtaatc ... tcataagcagCTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
EST: gi|15814831|gb|BI787106.1|BI787106
EST:     CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACT                         CTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
genomic: CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACTgtaagtaatc ... tcataagcagCTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
EST: gi|151407412|gb|EV277227.1|EV277227
EST:     CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACT                         CTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
genomic: CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACTgtaagtaatc ... tcataagcagCTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
EST: gi|15663707|gb|BI701078.1|BI701078
EST:     CAGGAGCCAAGGCATTTGTTGCTGCTACTATTGCCACTGCCATTCCAACT                         CTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
genomic: CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACTgtaagtaatc ... tcataagcagCTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
EST: gi|21285533|gb|BQ473404.1|BQ473404
EST:     CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACT                         CTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
genomic: CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACTgtaagtaatc ... tcataagcagCTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
EST: gi|15814835|gb|BI787110.1|BI787110
EST:     CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACT                         CTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
genomic: CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACTgtaagtaatc ... tcataagcagCTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
EST: gi|18039261|gb|BM307555.1|BM307555
EST:     CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACT                         CTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
genomic: CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACTgtaagtaatc ... tcataagcagCTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
EST: gi|151413250|gb|EV283058.1|EV283058
EST:     CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACT                         CTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
genomic: CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACTgtaagtaatc ... tcataagcagCTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
EST: gi|19052777|gb|BM731444.1|BM731444
EST:     CAGGAGCCAAAGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACT                         CTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
genomic: CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACTgtaagtaatc ... tcataagcagCTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
EST: gi|19052798|gb|BM731465.1|BM731465
EST:     CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACT                         CTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
genomic: CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACTgtaagtaatc ... tcataagcagCTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
EST: gi|21285798|gb|BQ473669.1|BQ473669
EST:     CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACT                         CTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
genomic: CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACTgtaagtaatc ... tcataagcagCTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
EST: gi|298181005|gb|HO022444.1|HO022444
EST:     CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACT                         CTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
genomic: CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACTgtaagtaatc ... tcataagcagCTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
EST: gi|21678290|gb|BQ630641.1|BQ630641
EST:     CAGGAGCCAAGGCAGCNGTTGCNGCTACTATTGCCACTGCCATTCCAACT                         CTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT
genomic: CAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACTgtaagtaatc ... tcataagcagCTGGCTAGTGTAAGGATGCTACCTTGGGCAAGAGCAAATCTCAATCACACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGGTGCGATGGCAGGAGCCAAGGCAGCTGTTGCTGCTACTATTGCCACTGCCATTCCAACTgtaagtaatccttccacctactcaattattttttacataaagttcccatgaatcatgaatcacgatcaatttacgattagattaaccttccacttcttaatattcaaatagaaatttttatttttataaataactaactggaattatgctttgatcataagcag

- - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - GCTGCT