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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaacctttaaatgtttttgcttcaacagcttgtacagttccattctatttaaattgatgccgctgaacctcatgaacagGTTAAACCACAGTTCTATGCATTCAGATGGATTACACTCCTACTCACGCAAGAGTTCAAATTTGAGTATATCTTGAGAATATGGGATACACTTCTGAGTA

Basic information

species Glycine max
transcript GLYMA17G12320.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193400502|gb|FK369655.1|FK369655
EST:     TAAAAGTAAATGATGAACAATTATGGCGTCATTTTGAATTGAGAACAAAG                         GTTAAACCACAGTTCTATGCATTCAGATGGATTACACTCCTACTCACGCAA
genomic: TAAAAGTAAATGATGAACAATTATGGCGTCATTTTGAATTGAGAACAAAGgtagaacctt ... tcatgaacagGTTAAACCACAGTTCTATGCATTCAGATGGATTACACTCCTACTCACGCAA
EST: gi|193380257|gb|FK348691.1|FK348691
EST:     TAAAAGTAAATGATGAACAATTATGGCGTCATTTTGAATTGAGAACAAAG                         GTTAAACCACAGTTCTATGCATTCAGATGGATTACACTCCTACTCACGCAA
genomic: TAAAAGTAAATGATGAACAATTATGGCGTCATTTTGAATTGAGAACAAAGgtagaacctt ... tcatgaacagGTTAAACCACAGTTCTATGCATTCAGATGGATTACACTCCTACTCACGCAA
EST: gi|193393828|gb|FK359905.1|FK359905
EST:     TAAAAGTAAATGATGAACAATTATGGCGTCATTTTGAATTGAGAACAAAG                         GTTAAACCACAGTTCTATGCATTCAGATGGATTACACTCCTACTCACGCAA
genomic: TAAAAGTAAATGATGAACAATTATGGCGTCATTTTGAATTGAGAACAAAGgtagaacctt ... tcatgaacagGTTAAACCACAGTTCTATGCATTCAGATGGATTACACTCCTACTCACGCAA
EST: gi|193435267|gb|FK404121.1|FK404121
EST:     T-AAAGTAAATGATGAACAATTATGGCGTCATTTTGAATTGAGAACAAAG                         GTTAAACCACAGTTCTATGCATTCAGATGGATTACACTCCTACTCACGCAA
genomic: TAAAAGTAAATGATGAACAATTATGGCGTCATTTTGAATTGAGAACAAAGgtagaacctt ... tcatgaacagGTTAAACCACAGTTCTATGCATTCAGATGGATTACACTCCTACTCACGCAA
EST: gi|193381479|gb|FK347532.1|FK347532
EST:     T-AAAGTAAATGATGAACAATTATGGCGTCATTTTGAATTGAGAACAAAG                         GTTAAACCACAGTTCTATGCATTCAGATGGATTACACTCCTACTCACGCAA
genomic: TAAAAGTAAATGATGAACAATTATGGCGTCATTTTGAATTGAGAACAAAGgtagaacctt ... tcatgaacagGTTAAACCACAGTTCTATGCATTCAGATGGATTACACTCCTACTCACGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acagcttgtacagttccattctatttaaattgatgccgctgaacctcatgaacagGTTAAACCACAGTTCTATGCATTCAGATGGATTACACTCCTACTCACGCAAGAGTTCAAATTTGAGTATATCTTGAGAATATGGGATACACTTCTGAGTA
                           aattgat  putative branch site (score: 4)
                 attctatttaaattga  TA-rich tract