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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttaggtatctctctctcaatcaaactcctcggcaaactttcaggaaaaaattaatacttagcttacaatattagtgtggttttacttgtcattttgattaataatatgttacctggcttaaatttcttttgcagGATATGCTTCTTCGGATCTGTTGCGCAATGCTACTTTGCGTGAAAAGCAAACTGCTAAGTGGTGATTTTGTGACCAATTTAAAACTTTTACAACACTACC

Basic information

species Glycine max
transcript GLYMA17G12320.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12320.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv11s0016g05350.t01 (Vitis vinifera), 3'ss of exon 8
gtttaggtatctctctctcaatcaaactcctcggcaaactttcaggaaaaaattaatacttagcttacaatattag-tgtggttttacttgtca--ttttgattaataatatgttacctggcttaaatttcttttgcagGATATGCTTCTTCGGATCTGTTGCGCAATGCTACTTTGCGTGAAAAGCAAACTGCTAAGTGGTGATTTTGTGACCAATTTAAAACTTTTACAACACTACC
                                                     || | ||   ||  |||| |||  |   |   | ||   ||  |  ||||  |  |   |  ||||    | | |       |||||| |||||||| ||  ||||||| |||||||| || ||| | ||||||| |||  | |||||||||||||   ||||  |||| |||||||| |||||||
----------------------------------------------gttggtctattgct---ctctcaattttaactaaaggccttctgaccaaatcctgatccactaggagaaacctttactgagt-------gcagGAAATGCTTCTGCGTGTCTGTTGTGCAATGCTGCTGTGCATAAAAAGCAGACTATTGAGTGGTGATTTTGCAGCCAACCTAAAGCTTTTACAGCACTACC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttacttgtcattttgattaataatatgttacctggcttaaatttcttttgcagGATATGCTTCTTCGGATCTGTTGCGCAATGCTACTTTGCGTGAAAAGCAAACTGCTAAGTGGTGATTTTGTGACCAATTTAAAACTTTTACAACACTACC
                gattaat  putative branch site (score: 3)
                                           tttcttttgc  putative PPT
         tcattttgattaataa  TA-rich tract