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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataactaactgcaccaccaaaaatctctacaagttttctattaattttttgtaagttttggtttttagctgagctacttatcaaacaactctcaattttgtttccacttttcagtgtaaagtgatagactatagggggttcgactcttattgaagtttttgttgatactttgactatagGAAGCGATGAAGAATATAATTCTCCTTTTTGCCAAGTTAAATCCTGAGATTCGTTATGTGCAAGGCATGAACGAAGTCTTGGCACCAAT

Basic information

species Glycine max
transcript GLYMA17G12320.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G12320.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv11s0016g05350.t01 (Vitis vinifera), 3'ss of exon 5
gtaataactaactgcaccaccaaaaatctctacaagttttctattaattttttgtaagttttggtttttagctgagctacttatcaaacaactctcaattttgtttccacttttcagtgtaaagtgatagactatagggggttcgactcttattgaagtttttgt----tgatac---tttgactatagGAAGCGATGAAGAATATAATTCTCCTTTTTGCCAAGTTAAATCCTGAGATTCGTTATGTGCAAGGCATGAACGAAGTCTTGGCACCAAT-----------
                        |    ||  ||||||||||||   |   |  | ||| |  | |  | | | | | ||   ||  ||| ||   ||||   |   |  |  ||   ||  | |||| |  |     |  | || ||||| ||||    ||||    || | |   | | |||| ||||||| ||||  | |||  ||||||| ||||| ||  |||||||||  || |||||||||||||||||||| ||||| |||||||||||           
----------------------gtatcgactttaagttttctatttgctaagta-atgttgttatctaaaccagggattctatacatccaattcatcatttccatggtaaatcccaa-atattgagataaatgaataatgaatagattcttactgaacgcattgtaatatgctgcatttctaactacagGAAGCAATGAGAAGTATTCTTCTCCTGTTTGCTAAACTAAATCCTGCAATCCGTTATGTGCAAGGCATGAATGAAGTATTGGCACCAATATACTATATAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagactatagggggttcgactcttattgaagtttttgttgatactttgactatagGAAGCGATGAAGAATATAATTCTCCTTTTTGCCAAGTTAAATCCTGAGATTCGTTATGTGCAAGGCATGAACGAAGTCTTGGCACCAAT
                                           ctttgac  putative branch site (score: 4)
                      ttattgaagttttt  TA-rich tract