1 5' 3' | 2 5' 3' | 3 5' 3' |
...ggtagcattttttttaataaaattactatttatgtattcaaatttctctttccagcttcttaattggatatcttacagtttctgggtaaccttttaacagTTGAGTGCCAGTCCTGAAGAAAAGACCGTGGTGGACACATTCAATTCCTCACTAGCTTCATTGATTTCATCAG
species | Glycine max |
transcript | GLYMA17G12190.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGGCACTGATACTGATTGGGTCCAAAATGCTAATGTAGCTTTGGATAAG TTGAGTGCCAGTCCTGAAGAAAAGACCGTGGTGGACACATTCAATTCCTCAEST: gi|213598781|gb|DB968252.1|DB968252
genomic: GTGGCACTGATACTGATTGGGTCCAAAATGCTAATGTAGCTTTGGATAAGgttagtctgg ... cttttaacagTTGAGTGCCAGTCCTGAAGAAAAGACCGTGGTGGACACATTCAATTCCTCA
EST: GTGGCACTGATACTGATTGGGTCCAAAATGCTAATGTAGCTTTGGATAAG TTGAGTGCCAGTCCTGAAGAAAAGACCGTGGTGGACACATTCAATTCCTCA
genomic: GTGGCACTGATACTGATTGGGTCCAAAATGCTAATGTAGCTTTGGATAAGgttagtctgg ... cttttaacagTTGAGTGCCAGTCCTGAAGAAAAGACCGTGGTGGACACATTCAATTCCTCA
ctctttccagcttcttaattggatatcttacagtttctgggtaaccttttaacagTTGAGTGCCAGTCCTGAAGAAAAGACCGTGGTGGACACATTCAATTCCTCACTAGCTTCATTGATTTCATCAG
gggtaac putative branch site (score: 3)
cctttt CT-rich tract
ttcttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtagcattttttttaataaaattactatttatgtattcaaatttctctttccagcttcttaattggatatcttacagtttctgggtaaccttttaacagTTGAGTGCCAGTCCTGAAGAAAAGACCGTGGTGGACACATTCAATTCCTCACTAGCTTCATTGATTTCATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - -aataaaa
- - - - - - - - - - - - - - - - tgtattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtttctg