1 5' 3' | 2 5' 3' | 3 5' 3' |
...cagaatcaaaagaaaaatttcaggctgccttcatttttactaaattcacaaattcagccagcacaagacttagcaactgaaagttgaaaaatatttgcagGTTATCTTCAGGACCTGGTGTATAAACTGAGTGAAGTTGGTAAAGCAATTGAAAACAATGATCTAGCGACAGCTGCTTCTGTCTTTGGGAGTGGCACTGA
species | Glycine max |
transcript | GLYMA17G12190.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTGTTGGAAAAAGTAAAGAGGGATAGAAAAAAGAGACTTGAGAGACAAG GTTATCTTCAGGACCTGGTGTATAAACTGAGTGAAGTTGGTAAAGCAATTGEST: gi|213598781|gb|DB968252.1|DB968252
genomic: GCTGTTGGAAAAAGTAAAGAGGGATAGAAAAAAGAGACTTGAGAGACAAGgtatgatcaa ... atatttgcagGTTATCTTCAGGACCTGGTGTATAAACTGAGTGAAGTTGGTAAAGCAATTG
EST: GCTGTTGGAAAAAGTAAAGAGGGATAGAAAAAAGAGACTTGAGAGACAAG GTTATCTTCAGGACCTGGTGTATAAACTGAGTGAAGTTGGTAAAGCAATTG
genomic: GCTGTTGGAAAAAGTAAAGAGGGATAGAAAAAAGAGACTTGAGAGACAAGgtatgatcaa ... atatttgcagGTTATCTTCAGGACCTGGTGTATAAACTGAGTGAAGTTGGTAAAGCAATTG
tcacaaattcagccagcacaagacttagcaactgaaagttgaaaaatatttgcagGTTATCTTCAGGACCTGGTGTATAAACTGAGTGAAGTTGGTAAAGCAATTGAAAACAATGATCTAGCGACAGCTGCTTCTGTCTTTGGGAGTGGCACTGA
aaagttgaaaaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagaatcaaaagaaaaatttcaggctgccttcatttttactaaattcacaaattcagccagcacaagacttagcaactgaaagttgaaaaatatttgcagGTTATCTTCAGGACCTGGTGTATAAACTGAGTGAAGTTGGTAAAGCAATTGAAAACAATGATCTAGCGACAGCTGCTTCTGTCTTTGGGAGTGGCACTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - -aagaaaa
- - - - - - - - - - - - ctgcctt
- - - - - - - - - - - - - - - - - - - - - -attcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccagcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaactg