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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTACTCCCTACTTGGCCTCCAATAGCTCCAGTCCCCTCTGGTATGCAGTCAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatctcctctttatctacttattaatattccttacatgttgagttgaaagagaagaaattgtttttattcaatcttattcggggttacaacatg...

Basic information

species Glycine max
transcript GLYMA17G11790.4
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G11790.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os06g43640.2 (Oryza sativa), 5'ss of exon 6
ACTACTCCCTACTTGGCCTCCAATAGCTCCAGTCCCCTCTGGTATGCAGTCAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatctcctctttatctacttattaatattccttacatgttgagttgaaagagaagaaattgtt---tttattcaatcttattcggggttacaacatg
   ||||| || ||||| || || |||     |||  | |||||||||||||| ||||| ||||||||||| |||||||| || |||||||| |||||||||||   |      |||| |||   |     | ||   || |||     || |    | | |||        |||| |   |       | |||    | |  
CACACTCCATATTTGGCATCAAAGAGCAGTTCTCCTATGTGGTATGCAGTCAGACGTGCATCTGCTCATATCATTGTGCTTTCTAGCTATTCTCCATTCGgtaagataaagatcctttctctgacttgctttgttttgtatatgcca--ttaagtctgtacaaaccaccagatttagt-ggtggcggctgtggtggtgatagt

upper sequence: GLYMA17G11790.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G34850.1 (Arabidopsis thaliana), 5'ss of exon 5
ACTACTCCCTACTTGGCCTCCAATAGCTCCAGTCCCCTCTGGTATGCAGTCAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaat----taat--ctcctctttatctacttattaatattccttacatgttgagttgaaagagaagaaattgtttttattcaatc-ttattcggggttacaacatg-----------------------------------------------------------
||||| || ||||| ||||| || ||   |||||| || ||||| || || |||||||| ||||||||||| ||||| || ||||||||||| || || ||||||    |||   |||  |   |||  ||  ||   | |  ||   | || | || | |   || | |||      | | | |  |||  |  |  |    | |                                                            
ACTACGCCTTACTTAGCCTCAAAAAGTAGCAGTCCTCTTTGGTACGCTGTTAGGCGTGCATCTGCTCATATCATTGTCCTCTCCAGCTATTCGCCTTTTGgtaataccttaactgctcaacaacatcccctgcttctaacttttttgttctttactttataagtaaaagatttacccaaatgagtggttaagcatgactctttcttataagtaaaagatttacccaaatgagtggttaagcatgactctttctgtgtgttgtacag

upper sequence: GLYMA17G11790.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv04s0008g06520.t01 (Vitis vinifera), 5'ss of exon 6
ACTACTCCCTACTTGGCCTCCAATAGCTCCAGTCCCCTCTGGTATGCAGTCAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatctcctctttatctacttattaatattccttacatgttgagttg-aaagagaagaaattgtttttattcaatcttattcggggttacaacatg
 |||| || ||  |||||||| | |||  || ||| || |||||||| ||||| ||||| || |||||||||||||||||||| || ||||| ||||| ||||||| |||    | || |||  || ||    |  |  |  || | |  ||  ||||  ||||||  |  ||  |   ||  | ||    ||    | ||
GCTACACCTTATATGGCCTCCCAAAGCAGCAATCCTCTTTGGTATGCTGTCAGACGTGCATCCGCTCATATAATTGTGCTATCAAGTTATTCTCCATTTGgtaattcatcattcccttctctg-ttgttgcattctcgcaggtgcttatatgtgaagattagaaatgttaatttctatgtcaaaatccattttttttcttg

upper sequence: GLYMA17G11790.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv11s0118g00240.t01 (Vitis vinifera), 5'ss of exon 6
ACTACTCCCTACTTGGCCTCCAATAGCTCCAGTCCCCTCTGGTATGCAGTCAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatctcctctttatctacttattaatattccttacatgttgagttgaaagagaagaaattgtttttattcaatct-tattcggggttacaacatg
 | || || ||    |||||||| |||   || || || ||||||||  |||| ||||| ||||||||||| ||||| || ||||||||||| ||||| |||||||  ||    |  | |||  |  ||  |         || || |  || |        |  |  | |||| | |||| ||| |      |   ||  
CCAACACCTTATGCAGCCTCCAAAAGCAGTAGCCCTCTTTGGTATGCCATCAGACGTGCATCTGCTCATATCATTGTTCTGTCCAGCTATTCTCCATTTGgtaatttttcattcccctgtctcttgtttccttcatacattatattaatctgtagctctcttatattctgttatgctatctatatgccaaacgagttcaa-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7692221|gb|AW760334.1|AW760334
EST:     CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCG                         TGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
genomic: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
EST: gi|208195824|gb|GD989989.1|GD989989
EST:     CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCG                         TGAAATACACTCCTCAATACATGTGGCTTAAAGAAG
genomic: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAG
EST: gi|6481590|gb|AW200861.1|AW200861
EST:     CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCG                         TGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
genomic: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
EST: gi|7690913|gb|AW759049.1|AW759049
EST:     CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCG                         TGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
genomic: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
EST: gi|11273813|gb|BF324205.1|BF324205
EST:     CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCG                         TGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
genomic: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
EST: gi|7693127|gb|AW761224.1|AW761224
EST:     CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCG                         TGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
genomic: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
EST: gi|13240434|gb|BG359743.1|BG359743
EST:     CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCG                         TGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
genomic: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
EST: gi|151411194|gb|EV281005.1|EV281005
EST:     CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCG                         TGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
genomic: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
EST: gi|207835765|gb|GD806504.1|GD806504
EST:     CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCG                         TGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
genomic: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
EST: gi|7796484|gb|AW781881.1|AW781881
EST:     CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCG                         TGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
genomic: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
EST: gi|7692539|gb|AW760642.1|AW760642
EST:     CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCG                         TGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
genomic: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
EST: gi|7326807|gb|AW620605.1|AW620605
EST:     CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCG                         TGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
genomic: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
EST: gi|193635387|gb|FK584782.1|FK584782
EST:     CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCG                         TGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
genomic: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
EST: gi|6481824|gb|AW201095.1|AW201095
EST:     CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCG                         TGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
genomic: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
EST: gi|6727109|gb|AW311463.1|AW311463
EST:     CACGCGTGCGTCTGCTCATATAATCGTGCTATCCAGCTATTCACCATTCG                         TGATATACACTCCTCAATACATGTAGCTTAAAGAAGAGCTGAAGCGAGTT
genomic: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTT
EST: gi|6483125|gb|AW202317.1|AW202317
EST:     CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCG                         TGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
genomic: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
EST: gi|16996117|gb|BM085489.1|BM085489
EST:     CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCG                         TGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
genomic: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
EST: gi|207759295|gb|GD731750.1|GD731750
EST:     CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCG                         TGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
genomic: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
EST: gi|22523010|gb|BU081821.1|BU081821
EST:     CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTTG                         TGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
genomic: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
EST: gi|193384819|gb|FK353177.1|FK353177
EST:     CATATAATTGTGCTATCCAGCTATTCACCATTCG                         TGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
genomic: CATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
EST: gi|7686599|gb|AW757247.1|AW757247
EST:     CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCG                         TGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
genomic: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
EST: gi|308098822|gb|HO760663.1|HO760663
EST:     CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTTG                         TGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
genomic: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
EST: gi|208339496|gb|GE133560.1|GE133560
EST:     CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCG                         TGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG
genomic: CAGGCGTGCGTCTGCTCATATAATTGTGCTATCCAGCTATTCACCATTCGgtaattaatc ... ttcataacagTGAAATACACTCCTCAATACATGTGGCTTAAAGAAGAGCTGAAGCGAGTTG