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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgttttcattttttagataatcacatgtgcttttataattctcatcttgctgtgtgtagaatgtctttgtttagtttaatcaatgatttccccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAATTTTGGTTCAAAACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAAT

Basic information

species Glycine max
transcript GLYMA17G11790.4
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193432592|gb|FK394278.1|FK394278
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|208239376|gb|GE041248.1|GE041248
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGNTTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|193384862|gb|FK353220.1|FK353220
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|193718891|gb|FK654821.1|FK654821
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|213602625|gb|DB956589.1|DB956589
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|209712757|gb|BW681611.1|BW681611
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|207680921|gb|GD662816.1|GD662816
EST:     ACAAATACAAGTCTGGCTACATTCATTACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|209701994|gb|BW670531.1|BW670531
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|151407026|gb|EV276841.1|EV276841
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|208051299|gb|GD847138.1|GD847138
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|207802621|gb|GD773904.1|GD773904
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|193684256|gb|FK623492.1|FK623492
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTAGATTCTTCTCGAGA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGT-GATTCTTCTCGAGA
EST: gi|193656312|gb|FK603358.1|FK603358
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|193635787|gb|FK579358.1|FK579358
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTG
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTG
EST: gi|193303025|gb|FK267529.1|FK267529
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|213604561|gb|DB966648.1|DB966648
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGA
EST: gi|208076506|gb|GD873937.1|GD873937
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|209706576|gb|BW667829.1|BW667829
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACCACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|208173897|gb|GD966808.1|GD966808
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|208165423|gb|GD961591.1|GD961591
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|23726031|gb|BU760993.1|BU760993
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|192311754|gb|FK003587.1|FK003587
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGGAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|208274989|gb|GE067179.1|GE067179
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|254344611|gb|GR855482.1|GR855482
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|193572862|gb|FK528689.1|FK528689
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTC
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTC
EST: gi|192299966|gb|FG991812.1|FG991812
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|6483220|gb|AW202396.1|AW202396
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCCTCTTGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|208161321|gb|GD963495.1|GD963495
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|193705463|gb|FK642713.1|FK642713
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|209705502|gb|BW673523.1|BW673523
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|208150158|gb|GD946899.1|GD946899
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|6727109|gb|AW311463.1|AW311463
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|208087113|gb|GD882905.1|GD882905
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAAGTGGTGATTCTTCTCGAGA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAA-GTGGTGATTCTTCTCGAGA
EST: gi|120530447|gb|EH258580.1|EH258580
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|193461361|gb|FK428074.1|FK428074
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|254343421|gb|GR857125.1|GR857125
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|213596260|gb|DB960217.1|DB960217
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGT
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGT
EST: gi|209728180|gb|BW651615.1|BW651615
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|192311725|gb|FK003586.1|FK003586
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGGAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|209714892|gb|BW682057.1|BW682057
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|19453471|gb|BM954881.1|BM954881
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|8827970|gb|BE211700.1|BE211700
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: gi|208115711|gb|GD908590.1|GD908590
EST:     ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG                         TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgctgtgtgtagaatgtctttgtttagtttaatcaatgatttccccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAATTTTGGTTCAAAACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAAT
                            gtttaat  putative branch site (score: 4)
                                         tttccccatttc  putative PPT
                    tttgtttagtttaat  TA-rich tract