1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAATAAATTTCAAACTAGTGAAGAAGGCACAGTTACAAACTATACTTTCCACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgtttaatcaaattaagtaagtagaaatgtagaataatcaacacgtgcattatatttgcaatattaaaaataaaatcaattgagaactgaaatct...
species | Glycine max |
transcript | GLYMA17G11790.4 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|208239376|gb|GE041248.1|GE041248
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGNTTCTTCTCGAGAAEST: gi|193384862|gb|FK353220.1|FK353220
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|193718891|gb|FK654821.1|FK654821
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|213602625|gb|DB956589.1|DB956589
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|209712757|gb|BW681611.1|BW681611
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|207680921|gb|GD662816.1|GD662816
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATTACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|209701994|gb|BW670531.1|BW670531
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|151407026|gb|EV276841.1|EV276841
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|208051299|gb|GD847138.1|GD847138
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|207802621|gb|GD773904.1|GD773904
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|193684256|gb|FK623492.1|FK623492
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTAGATTCTTCTCGAGAEST: gi|193656312|gb|FK603358.1|FK603358
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGT-GATTCTTCTCGAGA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|193635787|gb|FK579358.1|FK579358
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGEST: gi|193303025|gb|FK267529.1|FK267529
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTG
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|213604561|gb|DB966648.1|DB966648
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAEST: gi|208076506|gb|GD873937.1|GD873937
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|209706576|gb|BW667829.1|BW667829
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACCACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|208173897|gb|GD966808.1|GD966808
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|208165423|gb|GD961591.1|GD961591
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|23726031|gb|BU760993.1|BU760993
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|192311754|gb|FK003587.1|FK003587
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGGAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|208274989|gb|GE067179.1|GE067179
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|254344611|gb|GR855482.1|GR855482
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|193572862|gb|FK528689.1|FK528689
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCEST: gi|192299966|gb|FG991812.1|FG991812
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTC
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|6483220|gb|AW202396.1|AW202396
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCCTCTTGAGAAEST: gi|208161321|gb|GD963495.1|GD963495
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|193705463|gb|FK642713.1|FK642713
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|209705502|gb|BW673523.1|BW673523
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|208150158|gb|GD946899.1|GD946899
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|6727109|gb|AW311463.1|AW311463
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|208087113|gb|GD882905.1|GD882905
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAAGTGGTGATTCTTCTCGAGAEST: gi|120530447|gb|EH258580.1|EH258580
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAA-GTGGTGATTCTTCTCGAGA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|193461361|gb|FK428074.1|FK428074
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|254343421|gb|GR857125.1|GR857125
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|213596260|gb|DB960217.1|DB960217
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTEST: gi|209728180|gb|BW651615.1|BW651615
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGT
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|192311725|gb|FK003586.1|FK003586
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGGAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|209714892|gb|BW682057.1|BW682057
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|19453471|gb|BM954881.1|BM954881
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|8827970|gb|BE211700.1|BE211700
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAAEST: gi|208115711|gb|GD908590.1|GD908590
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
EST: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAG TATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
genomic: ACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgttt ... cccatttcagTATGAGACTAAATACTACTATAGAATTGGAAGTGGTGATTCTTCTCGAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATAAATTTCAAACTAGTGAAGAAGGCACAGTTACAAACTATACTTTCCACAAATACAAGTCTGGCTACATTCATCACTGTCTTATTGAAGGCCTTGAGgtaattgtttaatcaaattaagtaagtagaaatgtagaataatcaacacgtgcattatatttgcaatattaaaaataaaatcaattgagaactgaaatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG