1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaattaaacaaaccatatctaaaatccttcttgaatatgattatgtcaaagatgtcttgtcatataggttttaattctatccttggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGACATTCCACACTGGAGATAAAAAATAGGACCCATGCTATCTACCACTGG
species | Glycine max |
transcript | GLYMA17G11790.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTTTACATAACAGTCGGAGATGGTGGAA-TCAAGAAG-TCTTGCTTCA-G GTTTTTGGATCCACCA-CCAGAATATTCTGCCTTTCGAEST: gi|6481590|gb|AW200861.1|AW200861
genomic: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCAC-AGCCAGAATATTCTGCTTTTCGA
EST: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCTAG GTTTTTGGATCCACAGCCAGAATATTCTGTCTTT-CGAGAAGCAAGCTACCEST: gi|192320104|gb|FK014174.1|FK014174
genomic: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTG-CTTTTCGAGAAGCAAGCTACG
EST: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCATGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGEST: gi|13240434|gb|BG359743.1|BG359743
genomic: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
EST: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGEST: gi|151411194|gb|EV281005.1|EV281005
genomic: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
EST: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGEST: gi|207706468|gb|GD687968.1|GD687968
genomic: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
EST: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGEST: gi|254324087|gb|GR840512.1|GR840512
genomic: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
EST: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGEST: gi|193681333|gb|FK624469.1|FK624469
genomic: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
EST: AAGAAGGTCTTGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGEST: gi|209728181|gb|BW651616.1|BW651616
genomic: AAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
EST: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGEST: gi|209714893|gb|BW682058.1|BW682058
genomic: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
EST: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGEST: gi|192320103|gb|FK014173.1|FK014173
genomic: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
EST: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCATGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGEST: gi|7796484|gb|AW781881.1|AW781881
genomic: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
EST: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGEST: gi|17153281|gb|BM143214.1|BM143214
genomic: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
EST: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGEST: gi|10231595|gb|BE800483.1|BE800483
genomic: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
EST: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGEST: gi|7692539|gb|AW760642.1|AW760642
genomic: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
EST: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAT GTTTTTAGGATCCEST: gi|193392304|gb|FK360129.1|FK360129
genomic: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTT-GGATCC
EST: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGEST: gi|58025077|gb|CX711818.1|CX711818
genomic: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
EST: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGEST: gi|19348807|gb|BM893339.1|BM893339
genomic: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
EST: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGEST: gi|193332504|gb|FK301622.1|FK301622
genomic: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
EST: ATGGTGGAAATCAAGAAGGTCTTGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGEST: gi|6567249|gb|AW234860.1|AW234860
genomic: ATGGTGGAAATCAAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
EST: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGEST: gi|22523010|gb|BU081821.1|BU081821
genomic: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
EST: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGEST: gi|151399107|gb|EV268978.1|EV268978
genomic: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
EST: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGEST: gi|208316365|gb|GE114049.1|GE114049
genomic: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
EST: AGAAGGCCTTGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGEST: gi|9899557|gb|BE608525.1|BE608525
genomic: AGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
EST: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGEST: gi|193463690|gb|FK426522.1|FK426522
genomic: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
EST: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGEST: gi|209705503|gb|BW673524.1|BW673524
genomic: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
EST: GTTTACATAACAGTCGGAGATGGTGGATATCAAGAAGGTCTTGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGEST: gi|13789618|gb|BG652209.1|BG652209
genomic: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
EST: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGEST: gi|254344612|gb|GR855483.1|GR855483
genomic: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
EST: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGEST: gi|208030696|gb|GD831170.1|GD831170
genomic: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
EST: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAG GTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
genomic: GTTTACATAACAGTCGGAGATGGTGGAAATCAAGAAGGTCTTGCTTCAAGgtaaattaaa ... ggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGG
attatgtcaaagatgtcttgtcatataggttttaattctatccttggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGACATTCCACACTGGAGATAAAAAATAGGACCCATGCTATCTACCACTGG
ttttaat putative branch site (score: 3)
atataggttttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaattaaacaaaccatatctaaaatccttcttgaatatgattatgtcaaagatgtcttgtcatataggttttaattctatccttggtcatgcagGTTTTTGGATCCACAGCCAGAATATTCTGCTTTTCGAGAAGCAAGCTACGGACATTCCACACTGGAGATAAAAAATAGGACCCATGCTATCTACCACTGG
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