1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagttatctgttattcaatgtttgttctactagaaaatagttttttgtatccttaattatagactctttctatttataatgcacaaagtgtctatcaggatttcgttttgctttgatttcccatgatttttattttgtagctctcacaaatgagtcattgcataaatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATACAAAGTGGAGCGCAGACTGTCTTATTTGTTGGAGATCTTTCTTATGCTGA
species | Glycine max |
transcript | GLYMA17G11790.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG GTGATTTGGGGEST: gi|193689287|gb|FK632660.1|FK632660
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGG
EST: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATACEST: gi|193718891|gb|FK654821.1|FK654821
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG GTGATTTGGGGEST: gi|207680921|gb|GD662816.1|GD662816
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGG
EST: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG GTGATTTGGGGEST: gi|254324086|gb|GR840511.1|GR840511
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGG
EST: TCCCTACAAATTTGGGATCATTG GTGATTTGTGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATACEST: gi|151407026|gb|EV276841.1|EV276841
genomic: TCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: ACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGGATCATTG GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATACEST: gi|193593904|gb|FK546146.1|FK546146
genomic: ACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGG-ATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATACEST: gi|207802621|gb|GD773904.1|GD773904
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATACEST: gi|208173897|gb|GD966808.1|GD966808
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATACEST: gi|208165423|gb|GD961591.1|GD961591
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: AACACCTCCCAAGGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG GTGATTTGGGGEST: gi|23726031|gb|BU760993.1|BU760993
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGG
EST: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATACEST: gi|254344611|gb|GR855482.1|GR855482
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATACEST: gi|192299966|gb|FG991812.1|FG991812
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATACEST: gi|208111807|gb|GD913305.1|GD913305
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATACEST: gi|193563452|gb|FK521341.1|FK521341
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: TCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATACEST: gi|6727109|gb|AW311463.1|AW311463
genomic: TCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATACEST: gi|193492541|gb|FK457457.1|FK457457
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: TCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATACEST: gi|120530447|gb|EH258580.1|EH258580
genomic: TCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCCTTG GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTEST: gi|193461361|gb|FK428074.1|FK428074
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCT
EST: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG -TGATTTGGGGEST: gi|254343421|gb|GR857125.1|GR857125
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGG
EST: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATACEST: gi|209728180|gb|BW651615.1|BW651615
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATACEST: gi|192311725|gb|FK003586.1|FK003586
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATACEST: gi|19453471|gb|BM954881.1|BM954881
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTG GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATACEST: gi|193702858|gb|FK639206.1|FK639206
genomic: AACACCTCCCAAAGTTGATCCAGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
EST: TCCCAAAGTTGTATTCCTAGATTCTCCCTACAAATTTGGGATCATTG GTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
genomic: TCCCAAAGTTG-A-TCC-AGATTCTCCCTACAAATTTGGGATCATTGgtaagttatc ... aatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATAC
cccatgatttttattttgtagctctcacaaatgagtcattgcataaatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATACAAAGTGGAGCGCAGACTGTCTTATTTGTTGGAGATCTTTCTTATGCTGA
ctctcac putative branch site (score: 3)
atttttattttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttatctgttattcaatgtttgttctactagaaaatagttttttgtatccttaattatagactctttctatttataatgcacaaagtgtctatcaggatttcgttttgctttgatttcccatgatttttattttgtagctctcacaaatgagtcattgcataaatattgcagGTGATTTGGGGCAAACGTTTAATTCTCTTTCCACCCTTGAGCATTATATACAAAGTGGAGCGCAGACTGTCTTATTTGTTGGAGATCTTTCTTATGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG