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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAAAATTCTGTGCCACCTGCACCATGACCAACTGAGGGCTGTCTTCCATGTTTCTCAAAAAATTAGAAAAGCTgtaagttgtgtctctgctgtgtttatatgcctttaaatgttctcttatgattttgctatagttttggctgctttttaatgactgactctttctaatattgttag

Basic information

species Glycine max
transcript GLYMA16G23250.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G23250.1 (Glycine max), 5'ss of exon 3
lower sequence: AT4G35930.1 (Arabidopsis thaliana), 5'ss of exon 3
GTTAAAATTCTGTGCCACCTGCACCATGACCAACTGAGGGCTGTCTTCCATGTTTCTCAAAAAATTAGAAAAGCTgtaagttgtgtctctgctgtgtttatatgcctttaaatgttctcttatgattttgctatagttttggctgctttttaatgactgactctttctaatattgttag---
||||||||  | || || |||||||||||||| |||| |||||| |||||||||||||||| ||| ||||  || ||| ||| | ||| | |  ||||||  |     |  ||     || |   ||||||   ||||||   || | | || | |     | |  ||  | ||   |    
GTTAAAATAGTTTGTCATCTGCACCATGACCAGCTGAAGGCTGTTTTCCATGTTTCTCAAAGAATAAGAATGGCCgtatgttct-tctttcccctgtttaagtttgcatccataaaagctcaattttttgc---agttttacttgatgtgtattaatctgttttgacttttctttgaaacag

upper sequence: GLYMA16G23250.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv00s2668g00010.t01 (Vitis vinifera), 5'ss of exon 2
GTTAAAATTCTGTGCCACCTGCACCATGACCAACTGAGGGCTGTCTTCCATGTTTCTCAAAAAATTAGAAAAGCTgtaagttgtgtctctgctgtgtttatatgcctttaaatgttctcttatgattttgctata-gttttggctgctttttaatgactgactctttctaatattgttag
|||||||| || || |||||||||||||||||| |||||||||| || ||||| || || |  ||||| || || ||||| | | | | | || | ||| | | |  | | |   |     |  ||||   |  |  ||   | ||  |     ||  |      ||   | |       
GTTAAAATACTATGTCACCTGCACCATGACCAATTGAGGGCTGTTTTTCATGTCTCACAGAGGATTAGGAAGGCAgtaagctctctgt-tcctctctttct-ttctctcagacactggtcaa--atttaaatgcatattcaaggtggataacggtgtttatactattgggacag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9984194|gb|BE658302.1|BE658302
EST:     CTCAAAAAATTAGAAAAGCT                         GTTATAATNNNAAGNNAGTTTCACTTCAATTATACTACTCCAGATCGCTCT
genomic: CTCAAAAAATTAGAAAAGCTgtaagttgtg ... atattgttagGTTATAATTGCAAGGCAGTTTCACTTCAATTATACTACTCCAGATCGCTCT
EST: gi|18040477|gb|BM308771.1|BM308771
EST:     GGCTGTCTTCCATGTTTCTCAAAAAATTAGAAAAGCT                         GTTATAATTGCAAGGCAGTTTCACTTCAATTATACTACTCCAGATCGCTCT
genomic: GGCTGTCTTCCATGTTTCTCAAAAAATTAGAAAAGCTgtaagttgtg ... atattgttagGTTATAATTGCAAGGCAGTTTCACTTCAATTATACTACTCCAGATCGCTCT
EST: gi|23729283|gb|BU762727.1|BU762727
EST:     ATGACCAACTGAGGGCTGTCTTCCATGTTTCTCAAAAAATTATAAAAGCT                         GTTATAATTGCAAGGAAGATTCACTTCAATTATACTACTCC
genomic: ATGACCAACTGAGGGCTGTCTTCCATGTTTCTCAAAAAATTAGAAAAGCTgtaagttgtg ... atattgttagGTTATAATTGCAAGGCAGTTTCACTTCAATTATACTACTCC
EST: gi|5677378|gb|AI938508.1|AI938508
EST:     GTTTCTCAAAAAATTAGAAAAGCT                         GTTATAATTGCAAGGCAGTTTCACTTCAATTATACTACTCCAGATCGCTCT
genomic: GTTTCTCAAAAAATTAGAAAAGCTgtaagttgtg ... atattgttagGTTATAATTGCAAGGCAGTTTCACTTCAATTATACTACTCCAGATCGCTCT