1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagttgtgtctctgctgtgtttatatgcctttaaatgttctcttatgattttgctatagttttggctgctttttaatgactgactctttctaatattgttagGTTATAATTGCAAGGCAGTTTCACTTCAATTATACTACTCCAGATCGCTCTCGGCAGGAGATGTTAAGTACAATGACTCCTCGTCCTACTGAGCATTGGC
species | Glycine max |
transcript | GLYMA16G23250.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTCAAAAAATTAGAAAAGCT GTTATAATNNNAAGNNAGTTTCACTTCAATTATACTACTCCAGATCGCTCTEST: gi|18040477|gb|BM308771.1|BM308771
genomic: CTCAAAAAATTAGAAAAGCTgtaagttgtg ... atattgttagGTTATAATTGCAAGGCAGTTTCACTTCAATTATACTACTCCAGATCGCTCT
EST: GGCTGTCTTCCATGTTTCTCAAAAAATTAGAAAAGCT GTTATAATTGCAAGGCAGTTTCACTTCAATTATACTACTCCAGATCGCTCTEST: gi|23729283|gb|BU762727.1|BU762727
genomic: GGCTGTCTTCCATGTTTCTCAAAAAATTAGAAAAGCTgtaagttgtg ... atattgttagGTTATAATTGCAAGGCAGTTTCACTTCAATTATACTACTCCAGATCGCTCT
EST: ATGACCAACTGAGGGCTGTCTTCCATGTTTCTCAAAAAATTATAAAAGCT GTTATAATTGCAAGGAAGATTCACTTCAATTATACTACTCCEST: gi|5677378|gb|AI938508.1|AI938508
genomic: ATGACCAACTGAGGGCTGTCTTCCATGTTTCTCAAAAAATTAGAAAAGCTgtaagttgtg ... atattgttagGTTATAATTGCAAGGCAGTTTCACTTCAATTATACTACTCC
EST: GTTTCTCAAAAAATTAGAAAAGCT GTTATAATTGCAAGGCAGTTTCACTTCAATTATACTACTCCAGATCGCTCT
genomic: GTTTCTCAAAAAATTAGAAAAGCTgtaagttgtg ... atattgttagGTTATAATTGCAAGGCAGTTTCACTTCAATTATACTACTCCAGATCGCTCT
attttgctatagttttggctgctttttaatgactgactctttctaatattgttagGTTATAATTGCAAGGCAGTTTCACTTCAATTATACTACTCCAGATCGCTCTCGGCAGGAGATGTTAAGTACAATGACTCCTCGTCCTACTGAGCATTGGC
ttctaat putative branch site (score: 2)
tttctaatattgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgtgtctctgctgtgtttatatgcctttaaatgttctcttatgattttgctatagttttggctgctttttaatgactgactctttctaatattgttagGTTATAATTGCAAGGCAGTTTCACTTCAATTATACTACTCCAGATCGCTCTCGGCAGGAGATGTTAAGTACAATGACTCCTCGTCCTACTGAGCATTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC