1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttcttgtatattacttttttatatattgatttatttgttttttggtatttgcttcatattgaactttttttttatcttatcttctcttcctctttaatagCTAGCTCAGATGGAAGTGAAGGAATTCTTAACATCTGATGAGAGTGAAAGTGATGATAGCAAGGATAATAATGAGACAGATGATCAGCCTGATAAAAGGG
species | Glycine max |
transcript | GLYMA16G23150.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGAACCTCTTCGTGCAAAGACATTGAAACAGAAATTCACTGATGATCAG CTAGCTCAGATGGAAGTGAAGGAATTCTTAACATCTGATGAGAGTGAAAGTEST: gi|11412233|gb|BF424244.1|BF424244
genomic: ATGAACCTCTTCGTGCAAAGACATTGAAACAGAAATTCACTGATGATCAGgtcagcttgc ... tctttaatagCTAGCTCAGATGGAAGTGAAGGAATTCTTAACATCTGATGAGAGTGAAAGT
EST: ATGAACCTCTTCGTGCAAAGACATTGAAACAGAAATTCACTGATGATCAG CTAGCTCAGATGGAAGTGAAGGAATTCTTAACATCTGATGAGAGTGAAAGT
genomic: ATGAACCTCTTCGTGCAAAGACATTGAAACAGAAATTCACTGATGATCAGgtcagcttgc ... tctttaatagCTAGCTCAGATGGAAGTGAAGGAATTCTTAACATCTGATGAGAGTGAAAGT
tatttgcttcatattgaactttttttttatcttatcttctcttcctctttaatagCTAGCTCAGATGGAAGTGAAGGAATTCTTAACATCTGATGAGAGTGAAAGTGATGATAGCAAGGATAATAATGAGACAGATGATCAGCCTGATAAAAGGG
ttgaacttttttttta CT-rich tract
ttcatattgaactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcttgtatattacttttttatatattgatttatttgttttttggtatttgcttcatattgaactttttttttatcttatcttctcttcctctttaatagCTAGCTCAGATGGAAGTGAAGGAATTCTTAACATCTGATGAGAGTGAAAGTGATGATAGCAAGGATAATAATGAGACAGATGATCAGCCTGATAAAAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - -tgcttca