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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTAAAACAGGAACCATAGAGAAGTTCTGTGACCTGCCTGGCATGCCTGATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatccacatgcttcattattaaccataacaccaattggttggccagcaactatcattcaaattttgtaaagaaaagggaaaagattatatccaaa...

Basic information

species Glycine max
transcript GLYMA16G22650.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6482037|gb|AW201308.1|AW201308
EST:     ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG                         GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: gi|254344020|gb|GR850930.1|GR850930
EST:     ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG                         GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: gi|7286145|gb|AW598632.1|AW598632
EST:     ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG                         GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: gi|105632745|gb|DW246524.1|DW246524
EST:     ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG                         GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: gi|213591826|gb|DB977282.1|DB977282
EST:     ATAACATTCATTACGATGGACAAGGGCACTATTTGATTGCAATGTTCACG                         GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: gi|16343802|gb|BI969397.1|BI969397
EST:     ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG                         GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: gi|254332152|gb|GR845982.1|GR845982
EST:     ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG                         GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: gi|254336127|gb|GR841452.1|GR841452
EST:     ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG                         GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: gi|254336367|gb|GR842546.1|GR842546
EST:     ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG                         GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: gi|14991915|gb|BI317588.1|BI317588
EST:     ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG                         GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: gi|12690786|gb|BG157122.1|BG157122
EST:     ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG                         GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: gi|254348642|gb|GR852321.1|GR852321
EST:     ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG                         GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: gi|48575353|gb|CO036361.1|CO036361
EST:     ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG                         GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: gi|213594637|gb|DB975455.1|DB975455
EST:     ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG                         GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: gi|254343642|gb|GR857398.1|GR857398
EST:     ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG                         GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: gi|24136973|gb|BU927483.1|BU927483
EST:     ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG                         GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: gi|162286156|gb|FC456658.1|FC456658
EST:     ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG                         GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: gi|15202046|gb|BI425194.1|BI425194
EST:     ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG                         GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: gi|254332153|gb|GR845983.1|GR845983
EST:     ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG                         GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: gi|254334030|gb|GR848948.1|GR848948
EST:     ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG                         GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: gi|254344542|gb|GR855413.1|GR855413
EST:     ATTTGATTGCAATGTTCACG                         GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
genomic: ATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: gi|13789839|gb|BG652430.1|BG652430
EST:     ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG                         GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: gi|9983219|gb|BE657327.1|BE657327
EST:     ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG                         GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: gi|16343853|gb|BI969448.1|BI969448
EST:     ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG                         GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCCTAAAACAGGAACCATAGAGAAGTTCTGTGACCTGCCTGGCATGCCTGATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatccacatgcttcattattaaccataacaccaattggttggccagcaactatcattcaaattttgtaaagaaaagggaaaagattatatccaaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaaga