Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggttgttctttgtctaaattggatctcgttgatctcaaaccaactccttgcatagttttggaaagttggttgccttacttcaaatgtgctggttctgcagGATGAGATGCAATAAATATTTCGTCCTGGGCCCTAAAACAGGAACCATAGAGAAGTTCTGTGACCTGCCTGGCATGCCTGATAACATTCATTATGATGGA

Basic information

species Glycine max
transcript GLYMA16G22650.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6482037|gb|AW201308.1|AW201308
EST:     TTGGCAGTT-CACCAGATCAACAATTTGTGGTCTTCTGTGAATCTGTCTT                         GATGAGATGCAATAAATATTTCGTCCTGGGCCCTAAAACAGGAACCATAGA
genomic: TTG-CAGTTTCAGCAGATCAACAATTTGTGGTCTTCTGTGAATCTGTCTTgtaagttatt ... ggttctgcagGATGAGATGCAATAAATATTTCGTCCTGGGCCCTAAAACAGGAACCATAGA
EST: gi|254344020|gb|GR850930.1|GR850930
EST:     GTTGCAGTTTCAGCAGATCAACAATTTGTGGTCTTCTGTGAATCTGTCTT                         GATGAGATGCAATAAATATTTCGTCCTGGGCCCTAAAACAGGAACCATAGA
genomic: GTTGCAGTTTCAGCAGATCAACAATTTGTGGTCTTCTGTGAATCTGTCTTgtaagttatt ... ggttctgcagGATGAGATGCAATAAATATTTCGTCCTGGGCCCTAAAACAGGAACCATAGA
EST: gi|7286145|gb|AW598632.1|AW598632
EST:     GTTGCAGTTTCAGCAGATCAACAATTTGTGGTCTTCTGTGAATCTGTCTT                         GATGAGATGCAATAAATATTTCGTCCTGGGCCCTAAAACAGGAACCATAGA
genomic: GTTGCAGTTTCAGCAGATCAACAATTTGTGGTCTTCTGTGAATCTGTCTTgtaagttatt ... ggttctgcagGATGAGATGCAATAAATATTTCGTCCTGGGCCCTAAAACAGGAACCATAGA
EST: gi|213591826|gb|DB977282.1|DB977282
EST:     CAGTTTCAGCAGATCAACAATGGGTGGGCTTCTAG-AAATCTGTCTT                         GATGAGATGCAATAAATATTTCGTCCTGGGCCCTAAAACAGGAACCATAGA
genomic: CAGTTTCAGCAGATCAACAATTTGTGGTCTTCT-GTGAATCTGTCTTgtaagttatt ... ggttctgcagGATGAGATGCAATAAATATTTCGTCCTGGGCCCTAAAACAGGAACCATAGA
EST: gi|16343802|gb|BI969397.1|BI969397
EST:     GTTGCAGTTTCAGCAGATCAGCAATTTGTGGTCTTCTGTGAATCTGTCTT                         GATGAGATGCAATAAATATTTCGTCCTGGGCCCTAAAACAGGNNCCATAGA
genomic: GTTGCAGTTTCAGCAGATCAACAATTTGTGGTCTTCTGTGAATCTGTCTTgtaagttatt ... ggttctgcagGATGAGATGCAATAAATATTTCGTCCTGGGCCCTAAAACAGGAACCATAGA
EST: gi|254336127|gb|GR841452.1|GR841452
EST:     GTTGCAGTTTCAGCAGATCAACAATTTGTGGTCTTCTGTGAATCTGTCTT                         GATGAGATGCAATAAATATTTCGTCCTGGGCCCTAAAACAGGAACCATAGA
genomic: GTTGCAGTTTCAGCAGATCAACAATTTGTGGTCTTCTGTGAATCTGTCTTgtaagttatt ... ggttctgcagGATGAGATGCAATAAATATTTCGTCCTGGGCCCTAAAACAGGAACCATAGA
EST: gi|48575353|gb|CO036361.1|CO036361
EST:     GTGAATCTGTCTT                         GATGAGATGCAATAAATATTTCGTCCTGGGCCCTAAAACAGGAACCATAGA
genomic: GTGAATCTGTCTTgtaagttatt ... ggttctgcagGATGAGATGCAATAAATATTTCGTCCTGGGCCCTAAAACAGGAACCATAGA
EST: gi|254343642|gb|GR857398.1|GR857398
EST:     GTTGCAGTTTCAGCAGATCAACAATTTGTGGTCTTCTGTGAATCTGTCTT                         GATGAGATGCAATAAATATTTCGTCCTGGGCCCTAAAACAGGAACCATAGA
genomic: GTTGCAGTTTCAGCAGATCAACAATTTGTGGTCTTCTGTGAATCTGTCTTgtaagttatt ... ggttctgcagGATGAGATGCAATAAATATTTCGTCCTGGGCCCTAAAACAGGAACCATAGA
EST: gi|7588125|gb|AW703927.1|AW703927
EST:     GTTGCAGTTTCAGCAGATCAACAATTTGTGGTCTTCTGTGAATCTGTCTT                         GATGAGATGCAATAAATATTTCGTCCTGGGCCCTAAAACAGGAACCATAGA
genomic: GTTGCAGTTTCAGCAGATCAACAATTTGTGGTCTTCTGTGAATCTGTCTTgtaagttatt ... ggttctgcagGATGAGATGCAATAAATATTTCGTCCTGGGCCCTAAAACAGGAACCATAGA
EST: gi|24136973|gb|BU927483.1|BU927483
EST:     GTTGCAGTTTCAGCAGATCAACAATTTGTGGTCTTCTGTGAATCTGTCTT                         GATGAGATGCAATAAATATTTCGTCCTGGGCCCTAAAACAGGAACCATAGA
genomic: GTTGCAGTTTCAGCAGATCAACAATTTGTGGTCTTCTGTGAATCTGTCTTgtaagttatt ... ggttctgcagGATGAGATGCAATAAATATTTCGTCCTGGGCCCTAAAACAGGAACCATAGA
EST: gi|7233762|gb|AW569105.1|AW569105
EST:     GTTGCAGTTACAGCAGATCAACAATTTGTGGTCTTCTGTGAATCTGTCTT                         GATGAGATGCATTAAATAT
genomic: GTTGCAGTTTCAGCAGATCAACAATTTGTGGTCTTCTGTGAATCTGTCTTgtaagttatt ... ggttctgcagGATGAGATGCAATAAATAT
EST: gi|162286156|gb|FC456658.1|FC456658
EST:     GTTGCAGTTTCAGCAGATCAACAATTTGTGGTCTTCTGTGAATCTGTCTT                         GATGAGATGCAATAAATATTTCGTCCTGGGCCCTAAAACAGGAACCATAGA
genomic: GTTGCAGTTTCAGCAGATCAACAATTTGTGGTCTTCTGTGAATCTGTCTTgtaagttatt ... ggttctgcagGATGAGATGCAATAAATATTTCGTCCTGGGCCCTAAAACAGGAACCATAGA
EST: gi|7234818|gb|AW570151.1|AW570151
EST:     GTTGCAGTTTCAGCAGATCAACAATTTGTGGTCTTCTGTGAATCTGTCTT                         GATGAGATGCAATANATATTTCGTCCTGGGCCCTAATACAAGAACCATAGA
genomic: GTTGCAGTTTCAGCAGATCAACAATTTGTGGTCTTCTGTGAATCTGTCTTgtaagttatt ... ggttctgcagGATGAGATGCAATAAATATTTCGTCCTGGGCCCTAAAACAGGAACCATAGA
EST: gi|13789839|gb|BG652430.1|BG652430
EST:     GTTGCAGTTTCAGCAGATCAACAATTTGTGGTCTTCTGTGAATCTGTCTT                         GATGAGATGCAATAAATATTTCGTCCTGGGCCCTAAAACAGGAACCATAGA
genomic: GTTGCAGTTTCAGCAGATCAACAATTTGTGGTCTTCTGTGAATCTGTCTTgtaagttatt ... ggttctgcagGATGAGATGCAATAAATATTTCGTCCTGGGCCCTAAAACAGGAACCATAGA
EST: gi|9983219|gb|BE657327.1|BE657327
EST:     GTTGCAGTTTCAGCAGATCAACAATTTGTGGTCTTCTGTGAATCTGTCTT                         GATGAGATGCAATAAATATTTCGTCCTGGGCCCTAAAACAGGAACCATAGA
genomic: GTTGCAGTTTCAGCAGATCAACAATTTGTGGTCTTCTGTGAATCTGTCTTgtaagttatt ... ggttctgcagGATGAGATGCAATAAATATTTCGTCCTGGGCCCTAAAACAGGAACCATAGA
EST: gi|16343853|gb|BI969448.1|BI969448
EST:     NTTGCAGTTTCAGCAGATCAACAATTTGTGGTCTTCTGTGAATCTGTCTT                         GATGAGATGCAATAAATATTTCGTCCTGGGCCCTAAAACAGGAACCATAGA
genomic: GTTGCAGTTTCAGCAGATCAACAATTTGTGGTCTTCTGTGAATCTGTCTTgtaagttatt ... ggttctgcagGATGAGATGCAATAAATATTTCGTCCTGGGCCCTAAAACAGGAACCATAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttgcatagttttggaaagttggttgccttacttcaaatgtgctggttctgcagGATGAGATGCAATAAATATTTCGTCCTGGGCCCTAAAACAGGAACCATAGAGAAGTTCTGTGACCTGCCTGGCATGCCTGATAACATTCATTATGATGGA
                          gccttac  putative branch site (score: 3)
      atagtttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggttgttctttgtctaaattggatctcgttgatctcaaaccaactccttgcatagttttggaaagttggttgccttacttcaaatgtgctggttctgcagGATGAGATGCAATAAATATTTCGTCCTGGGCCCTAAAACAGGAACCATAGAGAAGTTCTGTGACCTGCCTGGCATGCCTGATAACATTCATTATGATGGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
ggttgtt
- - - - - - - - - - - - - - - - - tcaaacc
- - - - - - - - - - - - - - - - - - - - - - -ccttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgtgc