1 5' 3' | 2 5' 3' | 3 5' 3' |
...taaactatcattctccaaaagaaaaaagaaaaaaaaaatggcgcatgctttcgtcttgtttactgataagtattttttttttattttgcattacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAGGCTTTTGCAATGTTTACAAAGTATGTAGGGAGTCTATCTATCTCGAAGA
species | Glycine max |
transcript | GLYMA16G22650.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAGEST: gi|254344020|gb|GR850930.1|GR850930
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAGEST: gi|7286145|gb|AW598632.1|AW598632
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAGEST: gi|105632745|gb|DW246524.1|DW246524
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAGEST: gi|213591826|gb|DB977282.1|DB977282
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: ATAACATTCATTACGATGGACAAGGGCACTATTTGATTGCAATGTTCACG GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAGEST: gi|16343802|gb|BI969397.1|BI969397
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAGEST: gi|254332152|gb|GR845982.1|GR845982
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAGEST: gi|254336127|gb|GR841452.1|GR841452
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAGEST: gi|254336367|gb|GR842546.1|GR842546
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAGEST: gi|14991915|gb|BI317588.1|BI317588
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAGEST: gi|12690786|gb|BG157122.1|BG157122
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAGEST: gi|254348642|gb|GR852321.1|GR852321
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAGEST: gi|48575353|gb|CO036361.1|CO036361
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAGEST: gi|213594637|gb|DB975455.1|DB975455
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAGEST: gi|254343642|gb|GR857398.1|GR857398
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAGEST: gi|24136973|gb|BU927483.1|BU927483
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAGEST: gi|162286156|gb|FC456658.1|FC456658
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAGEST: gi|15202046|gb|BI425194.1|BI425194
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAGEST: gi|254332153|gb|GR845983.1|GR845983
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAGEST: gi|254334030|gb|GR848948.1|GR848948
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAGEST: gi|254344542|gb|GR855413.1|GR855413
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: ATTTGATTGCAATGTTCACG GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAGEST: gi|13789839|gb|BG652430.1|BG652430
genomic: ATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAGEST: gi|9983219|gb|BE657327.1|BE657327
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAGEST: gi|16343853|gb|BI969448.1|BI969448
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
EST: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACG GCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
genomic: ATAACATTCATTATGATGGACAAGGGCACTATTTGATTGCAATGTTCACGgtatgtatcc ... ttacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAG
tgctttcgtcttgtttactgataagtattttttttttattttgcattacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAGGCTTTTGCAATGTTTACAAAGTATGTAGGGAGTCTATCTATCTCGAAGA
tactgat putative branch site (score: 2)
tttactgataagtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaactatcattctccaaaagaaaaaagaaaaaaaaaatggcgcatgctttcgtcttgtttactgataagtattttttttttattttgcattacttgcagGCCCTTTCTCCCGAATTGGAATTGGCATATAGATACCCTTTCATTAGGAAGGCTTTTGCAATGTTTACAAAGTATGTAGGGAGTCTATCTATCTCGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - ctccaaa
- - - - - - - - -aaagaaa
- - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - gcatgct