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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaataagagcatgccttgccattgatattgataattcctttcttgtattgttattaagtgggttaaaatttagatttttgacgaacttctccaaagatactatttgatattgaatttgaatgtatataacactttgaaatgaatggacagATGAAAATAAGCATCTATCGGAGGAGTTTTTCTATAGCAAAGATGAAACCACAGAAAATTACTACATAAATTGAGGTGCTGAAAAAAAATAGAGGCAAGT

Basic information

species Glycine max
transcript GLYMA16G22630.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17022619|gb|BM093653.1|BM093653
EST:     GGTTATTGGAAGAGTACATGAGCATTATCCATCCTTAACCATGCAGCAAG                         ATGAAAATAAGCATCTATCGGAGGAGTTTTTCTATAGCAAAGATGAAACC
genomic: GGTTATTGGAAGAGTACATGAGCATTATCCATCCTTAACCATGCAGCAAGgtaagcaata ... gaatggacagATGAAAATAAGCATCTATCGGAGGAGTTTTTCTATAGCAAAGATGAAACC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatactatttgatattgaatttgaatgtatataacactttgaaatgaatggacagATGAAAATAAGCATCTATCGGAGGAGTTTTTCTATAGCAAAGATGAAACCACAGAAAATTACTACATAAATTGAGGTGCTGAAAAAAAATAGAGGCAAGT
                            atataac  putative branch site (score: 3)
     tatttgatattgaatt  TA-rich tract